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Clhc1 Gene Detail
Summary
  • Symbol
    Clhc1
  • Name
    clathrin heavy chain linker domain containing 1
  • Synonyms
    1700034F02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920574
    NCBI Gene: 73324
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr11:29547950-29578360 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 16.79 cM, cytoband A4
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    145 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1920574
protein coding gene Chr11:29547950-29578367 (+)
129S1/SvImJ MGP_129S1SvImJ_G0018110
protein coding gene Chr11:27565837-27601237 (+)
A/J MGP_AJ_G0018082
protein coding gene Chr11:26541380-26573063 (+)
AKR/J MGP_AKRJ_G0018047
protein coding gene Chr11:27406781-27438627 (+)
BALB/cJ MGP_BALBcJ_G0018050
protein coding gene Chr11:26744930-26780121 (+)
C3H/HeJ MGP_C3HHeJ_G0017864
protein coding gene Chr11:27320918-27352043 (+)
C57BL/6NJ MGP_C57BL6NJ_G0018503
protein coding gene Chr11:28498796-28535263 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0016160
protein coding gene Chr11:25180506-25210086 (+)
CAST/EiJ MGP_CASTEiJ_G0017426
protein coding gene Chr11:27376960-27414366 (+)
CBA/J MGP_CBAJ_G0017838
protein coding gene Chr11:29846795-29879549 (+)
DBA/2J MGP_DBA2J_G0017948
protein coding gene Chr11:26401079-26433882 (+)
FVB/NJ MGP_FVBNJ_G0017940
protein coding gene Chr11:26201537-26231621 (+)
LP/J MGP_LPJ_G0018020
protein coding gene Chr11:27813969-27852205 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017966
protein coding gene Chr11:30934793-30974347 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0018543
protein coding gene Chr11:27504841-27537760 (+)
PWK/PhJ MGP_PWKPhJ_G0017208
protein coding gene Chr11:26489215-26520973 (+)
SPRET/EiJ MGP_SPRETEiJ_G0017003
protein coding gene Chr11:27200232-27235339 (+)
WSB/EiJ MGP_WSBEiJ_G0017479
protein coding gene Chr11:27211600-27245559 (+)



Homology
more
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C2orf63
  • Links
    NCBI Gene ID: 130162
    neXtProt AC: NX_Q8NHS4
    UniProt: Q8NHS4

  • Chr Location
    2p16.1; chr2:55172547-55232563 (-)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 73324 NCBI Gene Model | MGI Sequence Detail 30411 C57BL/6J ±  kb
transcript NM_028504 RefSeq | MGI Sequence Detail 2185 C57BL/6  
polypeptide Q5M6W3 UniProt | EBI | MGI Sequence Detail 596 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031591 clathrin heavy chain linker domain-containing protein 1
  • InterPro Domains
    IPR016024 Armadillo-type fold
    IPR012331 Clathrin, heavy chain, linker
    IPR017212 Clathrin heavy chain linker domain-containing protein 1
    IPR032755 Translin-associated factor X-interacting protein 1, N-terminal
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 3
References
more
  • Summaries
    All 30
    Phenotypes 11
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory