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Clhc1 Gene Detail
Summary
  • Symbol
    Clhc1
  • Name
    clathrin heavy chain linker domain containing 1
  • Synonyms
    1700034F02Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1920574
    NCBI Gene: 73324
Location & Maps
more
  • Sequence Map
    Chr11:29547950-29578367 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      30418 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 16.79 cM, cytoband A4
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    CLHC1, clathrin heavy chain linker domain containing 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C2orf63
  • Links
    NCBI Gene ID: 130162
    neXtProt AC: NX_Q8NHS4

  • Chr Location
    2p16.1; chr2:55172547-55232563 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    36
  • Chemically induced (other)
    1
  • Gene trapped
    32
  • Targeted
    3
  • Genomic Mutations
    1 involving Clhc1
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
less
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000005332 VEGA Gene Model | MGI Sequence Detail 30418 C57BL/6J ±  kb
transcript OTTMUST00000011891 VEGA | MGI Sequence Detail 2200 Not Applicable  
polypeptide OTTMUSP00000005508 VEGA | MGI Sequence Detail 596 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    145 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000031591 clathrin heavy chain linker domain-containing protein 1
  • InterPro Domains
    IPR016024 Armadillo-type fold
    IPR012331 Clathrin, heavy chain, linker
    IPR017212 Clathrin heavy chain linker domain-containing protein 1
    IPR032755 Translin-associated factor X-interacting protein 1, N-terminal
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 3
References
more
  • Summaries
    All 27
    Phenotypes 11
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/12/2016
MGI 6.04
The Jackson Laboratory