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R3hcc1
Gene Detail
Symbol

Name
ID
R3hcc1
R3H domain and coiled-coil containing 1
MGI:1919093
Synonyms
1700020M16Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 14
36.08 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr14:69697307-69707584 bp, - strand
From VEGA annotation of GRCm38

  10278 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:136250  Vertebrate Homology Class
1 mouse; 1 rat

HCOP human homology predictions: R3HCC1
Gene Tree: R3hcc1

Human
homologs
R3HCC1, R3H domain and coiled-coil containing 1
Orthology source: HGNC

IDs:
NCBI Gene ID: 203069
neXtProt AC: NX_Q9Y3T6

Human Chr (Location): 8p21.3; chr8:23288092-23296279 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Gene trapped(4)
Incidental mutations (data from APF , CvDC )
Interactions
R3hcc1 interacts with 29 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component exon-exon junction complex
Function nucleic acid binding, nucleotide binding
External Resources: FuncBase
Expression
cDNA source data(48)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(48) cDNA(48)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000029904 (Evidence)
Ensembl Gene Model ENSMUSG00000034194 (Evidence)
Entrez Gene 71843 (Evidence)
UniGene 27738
DFCI TC1680805, TC1598238
DoTS DT.94153732, DT.530456, DT.97355321
NIA Mouse Gene Index U035735
Consensus CDS Project CCDS49533.1
International Mouse Phenotyping Consortium Status R3hcc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000029904 VEGA Gene Model | MGI Sequence Detail 10278 C57BL/6J ±  kb
transcript OTTMUST00000074192 VEGA | MGI Sequence Detail 1726 Not Applicable 
polypeptide OTTMUSP00000038528 VEGA | MGI Sequence Detail 488 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(7) UniProt(3)
Polymorphisms
SNPs within 2kb(115 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR001374 Single-stranded nucleic acid binding R3H
Protein Ontology PR:000030868 R3H and coiled-coil domain-containing protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(31)
Other
accession IDs
MGI:1353600

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory