About   Help   FAQ
R3hdm2
Gene Detail
Symbol

Name
ID
R3hdm2
R3H domain containing 2
MGI:1919000
Synonyms
1300003K24Rik, mKIAA1002
Feature Type
protein coding gene
Genetic Map
Chromosome 10
74.50 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr10:127380327-127499384 bp, + strand
From VEGA annotation of GRCm38

  119058 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8954  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: R3HDM2
Gene Tree: R3hdm2

Human
homologs
R3HDM2, R3H domain containing 2
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 22864
neXtProt AC: NX_Q9Y2K5

Human Synonyms: PR01365

Human Chr (Location): 12q13.3; chr12:57253764-57431000 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(115) : Gene trapped(112) Targeted(3)
Incidental mutations (data from Mutagenetix , APF )
Interactions
R3hdm2 interacts with 379 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component nucleus
Function nucleic acid binding, poly(A) RNA binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (15)    Tissues (4)    Images (8)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 15
cDNA source data(112)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase r3hdm2    NEW 
Molecular
reagents
All nucleic(112) cDNA(112)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000035856 (Evidence)
Ensembl Gene Model ENSMUSG00000025404 (Evidence)
Entrez Gene 71750 (Evidence)
UniGene 29342
DFCI TC1602889, TC1681632, TC1576152, TC1597310
DoTS DT.40140442, DT.110620737, DT.101394600, DT.101394598, DT.532816
NIA Mouse Gene Index U012149
Consensus CDS Project CCDS24241.1, CCDS48717.1, CCDS48718.1
International Mouse Phenotyping Consortium Status R3hdm2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035856 VEGA Gene Model | MGI Sequence Detail 119058 C57BL/6J ±  kb
transcript OTTMUST00000091866 VEGA | MGI Sequence Detail 4281 Not Applicable 
polypeptide OTTMUSP00000050650 VEGA | MGI Sequence Detail 1044 Not Applicable 

For the selected sequences
All sequences(150) RefSeq(36) UniProt(13)
Polymorphisms
SNPs within 2kb(542 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001374 Single-stranded nucleic acid binding R3H
InterPro IPR024771 SUZ domain
Protein Ontology PR:000032012 R3H domain-containing protein 2
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(34)
Other
accession IDs
MGI:2143757

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
05/20/2015
MGI 5.22
The Jackson Laboratory