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Sox5os1 Gene Detail
Summary
  • Symbol
    Sox5os1
  • Name
    SRY (sex determining region Y)-box 5, opposite strand 1
  • Synonyms
    4933415D12Rik
Location &
Maps
more
  • Sequence Map
    Chr6:144021908-144023778 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 6, 76.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    41 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918330
antisense lncRNA gene Chr6:144021908-144023778 (+)
129S1/SvImJ MGP_129S1SvImJ_G0004386
antisense lncRNA gene Chr6:148913637-148915507 (+)
A/J MGP_AJ_G0004363
antisense lncRNA gene Chr6:143049812-143051682 (+)
AKR/J MGP_AKRJ_G0004345
antisense lncRNA gene Chr6:147303219-147305088 (+)
BALB/cJ MGP_BALBcJ_G0004349
antisense lncRNA gene Chr6:142816228-142818098 (+)
C3H/HeJ MGP_C3HHeJ_G0004298
antisense lncRNA gene Chr6:147318465-147320335 (+)
C57BL/6NJ MGP_C57BL6NJ_G0004499
antisense lncRNA gene Chr6:152932671-152934541 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0003959
antisense lncRNA gene Chr6:141821775-141823673 (+)
CAST/EiJ MGP_CASTEiJ_G0004258
antisense lncRNA gene Chr6:146924482-146926351 (+)
CBA/J MGP_CBAJ_G0004292
antisense lncRNA gene Chr6:158768082-158769952 (+)
DBA/2J MGP_DBA2J_G0004307
antisense lncRNA gene Chr6:141865372-141867242 (+)
FVB/NJ MGP_FVBNJ_G0004324
antisense lncRNA gene Chr6:140592486-140594357 (+)
LP/J MGP_LPJ_G0004386
antisense lncRNA gene Chr6:149022731-149024602 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0004315
antisense lncRNA gene Chr6:162618501-162620371 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0004496
antisense lncRNA gene Chr6:147142150-147144020 (+)
PWK/PhJ MGP_PWKPhJ_G0004211
antisense lncRNA gene Chr6:140347607-140349475 (+)
SPRET/EiJ MGP_SPRETEiJ_G0004153
antisense lncRNA gene Chr6:145299703-145301580 (+)
WSB/EiJ MGP_WSBEiJ_G0004297
antisense lncRNA gene Chr6:147712065-147713935 (+)



Homology
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Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087302 Ensembl Gene Model | MGI Sequence Detail 1871 C57BL/6J ±  kb
transcript ENSMUST00000156994 Ensembl | MGI Sequence Detail 1585 Not Applicable  
For the selected sequence
Molecular
Reagents
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  • All nucleic 1
    cDNA 1

    Microarray probesets 1
References
more
  • Summaries
    All 8
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/22/2020
MGI 6.16
The Jackson Laboratory