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Copb1
Gene Detail
Symbol

Name
ID
Copb1
coatomer protein complex, subunit beta 1
MGI:1917599
Synonyms
2610019B04Rik, Copb1
Feature Type
protein coding gene
Genetic Map
Chromosome 7
59.31 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:114215559-114254680 bp, - strand
From NCBI annotation of GRCm38

  39122 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5664  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: COPB1
Protein SuperFamily: coatomer, beta subunit
Gene Tree: Copb1

Human
homologs
COPB1, coatomer protein complex, subunit beta 1
Orthology source: HomoloGene, HGNC

IDs:
NCBI Gene ID: 1315
neXtProt AC: NX_P53618

Human Synonyms: COPB

Human Chr (Location): 11p15.2; chr11:14457503-14499895 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Copb1 interacts with 164 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process intracellular protein transport, intra-Golgi vesicle-mediated transport, ...
Component COPI-coated vesicle, COPI vesicle coat, ...
Function structural molecule activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (154)    Tissues (20)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 154
cDNA source data(188)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase copb1    NEW 
Molecular
reagents
All nucleic(190) cDNA(189) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000030754 (Evidence)
Entrez Gene 70349 (Evidence)
UniGene 277024
DFCI TC1572799
DoTS DT.87072683, DT.111003642
NIA Mouse Gene Index U029148
Consensus CDS Project CCDS21759.1
International Mouse Phenotyping Consortium Status Copb1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 70349 NCBI Gene Model | MGI Sequence Detail 39122 C57BL/6J ±  kb
transcript NM_033370 RefSeq | MGI Sequence Detail 3315 C57BL/6 
polypeptide Q9JIF7 UniProt | EBI | MGI Sequence Detail 953 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(336 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
InterPro IPR016460 Coatomer beta subunit (COPB1)
InterPro IPR011710 Coatomer, beta subunit, C-terminal
Protein Ontology PR:000005734 coatomer subunit beta
Graphical View of Protein Domain Structure
References
(Earliest) J:42235 Hosaka M, et al., Structure and intracellular localization of mouse ADP-ribosylation factors type 1 to type 6 (ARF1-ARF6). J Biochem. 1996 Oct;120(4):813-9
(Latest) J:198864 Peterson TA, et al., ARF1-regulated coatomer directs the steady-state localization of protein kinase C epsilon at the Golgi apparatus. Biochim Biophys Acta. 2013 Mar;1833(3):487-93
All references(37)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/20/2015
MGI 5.22
The Jackson Laboratory