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Copb1
Gene Detail
Symbol

Name
ID
Copb1
coatomer protein complex, subunit beta 1
MGI:1917599
Synonyms
2610019B04Rik, Copb1
Feature Type
protein coding gene
Genetic Map
Chromosome 7
59.31 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr7:114215559-114254680 bp, - strand
From NCBI annotation of GRCm38

  39122 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:5664  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Protein SuperFamily: coatomer, beta subunit
Gene Tree: Copb1

Human
homologs
Human Homolog COPB1, coatomer protein complex, subunit beta 1
NCBI Gene ID 1315
neXtProt AC  NX_P53618
Human Synonyms  COPB
Human Chr (Location)  11p15.2; chr11:14457503-14499895 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Copb1 interacts with 164 markers (Mir1a-1, Mir1a-2, Mir7-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (20 annotations)
Process intracellular protein transport, intra-Golgi vesicle-mediated transport, ...
Component COPI-coated vesicle, COPI vesicle coat, ...
Function structural molecule activity
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (154)    Tissues (20)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 154
cDNA source data(188)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(190) cDNA(189) Primer pair(1)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000030754 (Evidence)
Entrez Gene70349 (Evidence)
UniGene277024
DFCITC1572799
DoTSDT.111003642, DT.87072683
NIA Mouse Gene IndexU029148
Consensus CDS ProjectCCDS21759.1
International Mouse Knockout Project StatusCopb1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 70349 NCBI Gene Model | MGI Sequence Detail 39122 C57BL/6J ±  kb
transcript NM_033370 RefSeq | MGI Sequence Detail 3315 C57BL/6 
polypeptide Q9JIF7 UniProt | EBI | MGI Sequence Detail 953 Not Applicable 

For the selected sequences
All sequences(22) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(336 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011989 Armadillo-like helical
InterPro IPR016024 Armadillo-type fold
InterPro IPR002553 Clathrin/coatomer adaptor, adaptin-like, N-terminal
InterPro IPR016460 Coatomer beta subunit (COPB1)
InterPro IPR011710 Coatomer, beta subunit, C-terminal
Protein Ontology PR:000005734 coatomer subunit beta
Graphical View of Protein Domain Structure
References
(Earliest) J:42235 Hosaka M, et al., Structure and intracellular localization of mouse ADP-ribosylation factors type 1 to type 6 (ARF1-ARF6). J Biochem. 1996 Oct;120(4):813-9
(Latest) J:198864 Peterson TA, et al., ARF1-regulated coatomer directs the steady-state localization of protein kinase C epsilon at the Golgi apparatus. Biochim Biophys Acta. 2013 Mar;1833(3):487-93
All references(38)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/18/2014
MGI 5.20
The Jackson Laboratory