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1700001L19Rik
Gene Detail
Symbol

Name
ID
1700001L19Rik
RIKEN cDNA 1700001L19 gene
MGI:1916565
Feature Type
protein coding gene
Genetic Map
Chromosome 13
35.55 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr13:68597439-68614231 bp, + strand
From NCBI annotation of GRCm38

  16793 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:28246  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 chicken; 1 zebrafish

HCOP human homology predictions: C5orf49
Gene Tree: 1700001L19Rik

Human
homologs
C5orf49, chromosome 5 open reading frame 49
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 134121
neXtProt AC: NX_A4QMS7

Human Chr (Location): 5p15.31; chr5:7830378-7851490 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(1) : Targeted(1)
Interactions
1700001L19Rik interacts with 172 markers (Mir7-1, Mir7-2, Mir9-1, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (74)    Tissues (9)    Images (22)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 74
cDNA source data(19)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(19) cDNA(19)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000021534 (Evidence)
Entrez Gene 69315 (Evidence)
UniGene 272795
DFCI TC1648567, TC1586710
DoTS DT.99839377, DT.91351847, DT.94170239
NIA Mouse Gene Index U014972
Consensus CDS Project CCDS49306.1
International Mouse Phenotyping Consortium Status 1700001L19Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 69315 NCBI Gene Model | MGI Sequence Detail 16793 C57BL/6J ±  kb
transcript NM_027035 RefSeq | MGI Sequence Detail 1808 C57BL/6 
polypeptide Q9DAR0 UniProt | EBI | MGI Sequence Detail 182 Not Applicable 

For the selected sequences
All sequences(18) RefSeq(2) UniProt(1)
Polymorphisms
SNPs within 2kb(118 from dbSNP Build 137)
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(21)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory