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Smdt1
Gene Detail
Symbol

Name
ID
Smdt1
single-pass membrane protein with aspartate rich tail 1
MGI:1916279
Synonyms
1500032L24Rik, Emre
Feature Type
protein coding gene
Genetic Map
Chromosome 15
38.56 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:82338959-82349091 bp, + strand
From VEGA annotation of GRCm38

  10133 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14110  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog

HCOP human homology predictions: SMDT1
Gene Tree: Smdt1

Human
homologs
SMDT1, single-pass membrane protein with aspartate-rich tail 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 91689
neXtProt AC: NX_Q9H4I9

Human Synonyms: C22orf32, DDDD, dJ186O1.1, EMRE

Human Chr (Location): 22q13.2; chr22:42079691-42084284 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(17) : Gene trapped(13) Radiation induced(1) Targeted(3)
Genomic Mutations involving Smdt1 (1)
Incidental mutations (data from APF )
Phenotype Images(2)
Interactions
Smdt1 interacts with 54 markers (Mir22, Mir101c, Mir148a, ...)
Gene Ontology
(GO)
classifications
Expression
Literature Summary: (1 records)
Data Summary: Results (71)    Tissues (16)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 71
cDNA source data(72)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase smdt1    NEW 
Molecular
reagents
All nucleic(72) cDNA(72)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000034180 (Evidence)
Ensembl Gene Model ENSMUSG00000022452 (Evidence)
Entrez Gene 69029 (Evidence)
UniGene 260042
DFCI TC1576980, TC1638994
Consensus CDS Project CCDS27688.1
International Mouse Phenotyping Consortium Status Smdt1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034180 VEGA Gene Model | MGI Sequence Detail 10133 C57BL/6J ±  kb
transcript OTTMUST00000086675 VEGA | MGI Sequence Detail 705 Not Applicable 
polypeptide OTTMUSP00000046935 VEGA | MGI Sequence Detail 107 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(2) UniProt(3)
Polymorphisms
SNPs within 2kb(162 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018782 Uncharacterised protein family UPF0466
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:203524 Sancak Y, et al., EMRE is an essential component of the mitochondrial calcium uniporter complex. Science. 2013 Dec 13;342(6164):1379-82
All references(35)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory