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Smdt1 Gene Detail
Summary
  • Symbol
    Smdt1
  • Name
    single-pass membrane protein with aspartate rich tail 1
  • Synonyms
    1500032L24Rik, Emre
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916279
    NCBI Gene: 69029
Location & Maps
more
  • Sequence Map
    Chr15:82338959-82349091 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      10133 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    SMDT1, single-pass membrane protein with aspartate-rich tail 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    SMDT1, single-pass membrane protein with aspartate-rich tail 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C22orf32, DDDD, dJ186O1.1, EMRE
  • Links
    NCBI Gene ID: 91689
    neXtProt AC: NX_Q9H4I9

  • Chr Location
    22q13.2; chr22:42079691-42084284 (+)  GRCh38.p2

Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    26 phenotype references
  • All Mutations and Alleles
    19
  • Chemically induced (other)
    1
  • Gene trapped
    13
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    3 involving Smdt1
  • Incidental Mutations
    APF
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034180 VEGA Gene Model | MGI Sequence Detail 10133 C57BL/6J ±  kb
transcript OTTMUST00000086675 VEGA | MGI Sequence Detail 705 Not Applicable  
polypeptide OTTMUSP00000046935 VEGA | MGI Sequence Detail 107 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    162 from dbSNP Build 137
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR018782 Uncharacterised protein family UPF0466
Molecular
Reagents
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  • All nucleic 72
    cDNA 72

    Microarray probesets 3
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 4
    Phenotypes 26
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:203524 Sancak Y, et al., EMRE is an essential component of the mitochondrial calcium uniporter complex. Science. 2013 Dec 13;342(6164):1379-82

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/02/2016
MGI 6.02
The Jackson Laboratory