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Smdt1
Gene Detail
 Symbol
Name
ID
Smdt1
single-pass membrane protein with aspartate rich tail 1
MGI:1916279
Synonyms 1500032L24Rik, Emre
Feature Type protein coding gene
Genetic Map
Chromosome 15
38.56 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr15:82338959-82349091 bp, + strand
From VEGA annotation of GRCm38

  10133 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:14110  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken

Gene Tree: Smdt1

Human
homologs
Human Homolog SMDT1, single-pass membrane protein with aspartate-rich tail 1
NCBI Gene ID 91689
neXtProt AC  NX_Q9H4I9
Human Synonyms  C22orf32, DDDD, dJ186O1.1, EMRE
Human Chr (Location)  22q13.2; chr22:42079691-42084284 (+)  GRCh38
Alleles
and
phenotypes
All alleles(16) : Gene trapped(13) Targeted(3)
Incidental mutations (data from APF )
Gene Ontology
(GO)
classifications
All GO classifications: (13 annotations)
Process calcium ion import into mitochondrion, calcium ion transport, ...
Component integral component of membrane, integral component of mitochondrial inner membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (71)    Tissues (16)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 71
cDNA source data(72)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(72) cDNA(72)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000034180 (Evidence)
Ensembl Gene ModelENSMUSG00000022452 (Evidence)
Entrez Gene69029 (Evidence)
UniGene260042
DFCITC1576980, TC1638994
Consensus CDS ProjectCCDS27688.1
International Mouse Knockout Project StatusSmdt1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000034180 VEGA Gene Model | MGI Sequence Detail 10133 C57BL/6J ±  kb
transcript OTTMUST00000086675 VEGA | MGI Sequence Detail 705 Not Applicable 
polypeptide OTTMUSP00000046935 VEGA | MGI Sequence Detail 107 Not Applicable 

For the selected sequences
All sequences(39) RefSeq(2) UniProt(3)
Polymorphisms SNPs within 2kb(162 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR018782 Uncharacterised protein family UPF0466
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:203524 Sancak Y, et al., EMRE is an essential component of the mitochondrial calcium uniporter complex. Science. 2013 Dec 13;342(6164):1379-82
All references(34)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory