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Tsr3
Gene Detail
 Symbol
Name
ID
Tsr3
TSR3 20S rRNA accumulation
MGI:1915577
Synonyms 0610007P22Rik, 1110014B11Rik
Feature Type protein coding gene
Genetic Map
Chromosome 17
12.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr17:25240170-25242798 bp, + strand
From Ensembl annotation of GRCm38

  2629 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:6922  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Tsr3

Human
homologs
Human Homolog TSR3, TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
NCBI Gene ID 115939
neXtProt AC  NX_Q9UJK0
Human Synonyms  C16orf42
Human Chr (Location)  16p13.3; chr16:1349240-1351872 (-)  GRCh38
Alleles
and
phenotypes
All alleles(4) : Gene trapped(3) Targeted(1)
Incidental mutations (data from APF )
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process ribosome biogenesis, rRNA processing
Component cellular_component
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (34)    Tissues (34)    Images (4)
Theiler Stages: 19, 20, 22, 24
Assay TypeResults
RNA in situ 34
cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress
Molecular
reagents
All nucleic(12) cDNA(12)
Microarray probesets(3)
Other database
links
Ensembl Gene ModelENSMUSG00000015126 (Evidence)
Entrez Gene68327 (Evidence)
NIA Mouse Gene IndexU017669
Consensus CDS ProjectCCDS28512.1
International Mouse Knockout Project StatusTsr3
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000015126 Ensembl Gene Model | MGI Sequence Detail 2629 C57BL/6J ±  kb
transcript ENSMUST00000063574 Ensembl | MGI Sequence Detail 1192 Not Applicable 
polypeptide ENSMUSP00000068511 Ensembl | MGI Sequence Detail 323 Not Applicable 

For the selected sequences
All sequences(31) RefSeq(10) UniProt(4)
Polymorphisms SNPs within 2kb(61 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007177 Domain of unknown function DUF367
InterPro IPR022968 Ribosome biogenesis protein
InterPro IPR007209 RNase L inhibitor RLI, possible metal-binding domain
Protein Ontology PR:000030855 ribosome biogenesis protein TSR3 homolog
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)
Other
accession IDs
MGI:1926015, MGI:2142654

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
07/15/2014
MGI 5.18
The Jackson Laboratory