Tsr3
Gene Detail

Symbol Name ID

Tsr3 TSR3 20S rRNA accumulation MGI:1915577

Synonyms

0610007P22Rik, 1110014B11Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 17

12.53 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr17:25240170-25242798 bp, + strand From Ensembl annotation of GRCm38   2629 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:6922  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Tsr3

Human homologs

Human Homolog		TSR3, TSR3, 20S rRNA accumulation, homolog (S. cerevisiae)
NCBI Gene ID		115939
neXtProt AC		NX_Q9UJK0
Human Synonyms		C16orf42
Human Chr (Location)		16p13.3; chr16:1399241-1401873 (-)  GRCh37.p10

Alleles and phenotypes

All alleles(4) : Targeted(1) Gene trapped(3)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	ribosome biogenesis, rRNA processing
Component	cellular_component
Function	molecular_function

External Resources: FuncBase

Expression

Literature Summary: (1 records)
Data Summary: Results (34)    Tissues (34)    Images (4)
Theiler Stages: 19, 20, 22, 24

Assay Type	Results
RNA in situ	34

cDNA source data(12)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(12) cDNA(12)
Microarray probesets(3)

Other database links

Ensembl Gene Model	ENSMUSG00000015126 (Evidence)
Entrez Gene	68327 (Evidence)
NIA Mouse Gene Index	U017669
Consensus CDS Project	CCDS28512.1
International Mouse Knockout Project Status	Tsr3

Sequences

Length	Strain/Species
genomic	ENSMUSG00000015126	Ensembl Gene Model | MGI Sequence Detail	2629	C57BL/6J
transcript	ENSMUST00000063574	Ensembl | MGI Sequence Detail	1192	Not Applicable
polypeptide	ENSMUSP00000068511	Ensembl | MGI Sequence Detail	323	Not Applicable

All sequences(25) RefSeq(4) UniProt(4)

Polymorphisms

SNPs(24 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR007177	Domain of unknown function DUF367
InterPro	IPR022968	Ribosome biogenesis protein
InterPro	IPR007209	RNase L inhibitor RLI, possible metal-binding domain
Protein Ontology	PR:000030855	ribosome biogenesis protein TSR3 homolog

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(27)

Other accession IDs

MGI:1926015, MGI:2142654