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U2surp
Gene Detail
Symbol

Name
ID
U2surp
U2 snRNP-associated SURP domain containing
MGI:1915208
Synonyms
2610101N10Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 9
50.11 cM, cytoband E4
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr9:95456898-95511996 bp, - strand
From VEGA annotation of GRCm38

  55099 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:13964  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: U2surp

Human
homologs
Human Homolog U2SURP, U2 snRNP-associated SURP domain containing
NCBI Gene ID 23350
neXtProt AC  NX_O15042
Human Synonyms  fSAPa, SR140
Human Chr (Location)  3q23; chr3:143001524-143060725 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(60) : Gene trapped(58) Targeted(2)
Incidental mutations (data from APF )
Interactions
U2surp interacts with 434 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Process RNA processing
Component nucleoplasm, nucleus
Function nucleic acid binding, nucleotide binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (22)    Tissues (22)    Images (3)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 20
RT-PCR 2
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(13) cDNA(12) Primer pair(1)
Microarray probesets(6)
Other database
links
VEGA Gene ModelOTTMUSG00000047001 (Evidence)
Ensembl Gene ModelENSMUSG00000032407 (Evidence)
Entrez Gene67958 (Evidence)
DFCITC1604182, TC1599499, TC1575952
DoTSDT.490752, DT.101256399, DT.94137421, DT.97411013
NIA Mouse Gene IndexU043864
Consensus CDS ProjectCCDS40727.1, CCDS52889.1
International Mouse Knockout Project StatusU2surp
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000047001 VEGA Gene Model | MGI Sequence Detail 55099 C57BL/6J ±  kb
transcript OTTMUST00000121758 VEGA | MGI Sequence Detail 7630 Not Applicable 
polypeptide OTTMUSP00000066994 VEGA | MGI Sequence Detail 1029 Not Applicable 

For the selected sequences
All sequences(57) RefSeq(8) UniProt(4)
Polymorphisms
SNPs within 2kb(418 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR006569 CID domain
InterPro IPR008942 ENTH/VHS
InterPro IPR013170 mRNA splicing factor, Cwf21
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
InterPro IPR000504 RNA recognition motif domain
InterPro IPR000061 SWAP/Surp
Protein Ontology PR:000015604 U2 snRNP-associated SURP motif-containing protein
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(37)
Other
accession IDs
MGI:2143220

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory