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Rtp4 Gene Detail
Summary
  • Symbol
    Rtp4
  • Name
    receptor transporter protein 4
  • Synonyms
    5830458K16Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1915025
    NCBI Gene: 67775
  • Alliance
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr16:23601293-23614222 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 14.55 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1915025
protein coding gene Chr16:23520291-23614222 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022685
protein coding gene Chr16:21198072-21202254 (+)
A/J MGP_AJ_G0022647
protein coding gene Chr16:20190562-20194891 (+)
AKR/J MGP_AKRJ_G0022621
protein coding gene Chr16:21052195-21056446 (+)
BALB/cJ MGP_BALBcJ_G0022652
protein coding gene Chr16:20388987-20393527 (+)
C3H/HeJ MGP_C3HHeJ_G0022416
protein coding gene Chr16:21162110-21166360 (+)
C57BL/6NJ MGP_C57BL6NJ_G0023101
protein coding gene Chr16:21734852-21739087 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020619
protein coding gene Chr16:20827210-20829769 (+)
CAST/EiJ MGP_CASTEiJ_G0021945
protein coding gene Chr16:21154058-21160888 (+)
CBA/J MGP_CBAJ_G0022387
protein coding gene Chr16:22602135-22609470 (+)
DBA/2J MGP_DBA2J_G0022519
protein coding gene Chr16:20144552-20150883 (+)
FVB/NJ MGP_FVBNJ_G0022495
protein coding gene Chr16:20148546-20152775 (+)
LP/J MGP_LPJ_G0022587
protein coding gene Chr16:20989512-20993697 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022514
protein coding gene Chr16:22105226-22110757 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0023113
protein coding gene Chr16:21004319-21008513 (+)
PWK/PhJ MGP_PWKPhJ_G0021684
protein coding gene Chr16:20424763-20429094 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021515
protein coding gene Chr16:20732042-20737324 (+)
WSB/EiJ MGP_WSBEiJ_G0021989
protein coding gene Chr16:20956264-20960434 (+)



Homology
more
  • Human Ortholog
    RTP4, receptor transporter protein 4
  • Vertebrate Orthologs
    7
  • Human Ortholog
    RTP4, receptor transporter protein 4
    Orthology source: HomoloGene, HGNC
  • Synonyms
    IFRG28, Z3CXXC4
  • Links
    NCBI Gene ID: 64108
    neXtProt AC: NX_Q96DX8
    UniProt: Q96DX8

  • Chr Location
    3q27.3; chr3:187368380-187371584 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67775 NCBI Gene Model | MGI Sequence Detail 12930 C57BL/6J ±  kb
transcript NM_023386 RefSeq | MGI Sequence Detail 1573 C57BL/6  
polypeptide Q9ER80 UniProt | EBI | MGI Sequence Detail 249 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 46
    cDNA 46

    Microarray probesets 3
References
more
  • Summaries
    All 24
    Gene Ontology 5
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
03/13/2019
MGI 6.13
The Jackson Laboratory