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Jagn1
Gene Detail
Symbol

Name
ID
Jagn1
jagunal homolog 1 (Drosophila)
MGI:1915017
Synonyms
5830427H10Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 6
52.76 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr6:113442569-113448229 bp, + strand
From VEGA annotation of GRCm38

  5661 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:41675  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 western clawed frog; 1 zebrafish

Gene Tree: Jagn1

Human
homologs
Human Homolog JAGN1, jagunal homolog 1 (Drosophila)
NCBI Gene ID 84522
neXtProt AC  NX_Q8N5M9
Human Synonyms  GL009, SCN6
Human Chr (Location)  3p25.2; chr3:9890587-9894349 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human JAGN1
Mutations,
alleles, and
phenotypes
All mutations/alleles(11) : Gene trapped(8) Targeted(3)
Incidental mutations (data from APF )
Interactions
Jagn1 interacts with 69 markers (Mir22, Mir24-1, Mir24-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (16 annotations)
Process defense response to fungus, endoplasmic reticulum organization, ...
Component endoplasmic reticulum, endoplasmic reticulum membrane, ...
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (28)    Tissues (5)    Images (20)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 28
cDNA source data(87)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(87) cDNA(87)
Microarray probesets(3)
Other database
links
VEGA Gene ModelOTTMUSG00000023562 (Evidence)
Ensembl Gene ModelENSMUSG00000051256 (Evidence)
Entrez Gene67767 (Evidence)
UniGene2053
DFCITC1576118, TC1622716
DoTSDT.110499205, DT.493935
NIA Mouse Gene IndexU007269
Consensus CDS ProjectCCDS20419.1
International Mouse Knockout Project StatusJagn1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000023562 VEGA Gene Model | MGI Sequence Detail 5661 C57BL/6J ±  kb
transcript OTTMUST00000057472 VEGA | MGI Sequence Detail 1201 Not Applicable 
polypeptide OTTMUSP00000027724 VEGA | MGI Sequence Detail 183 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(6) UniProt(1)
Polymorphisms
SNPs within 2kb(57 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR009787 Protein of unknown function DUF1352
Protein Ontology PR:000009195 protein jagunal homolog 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:214828 Wirnsberger G, et al., Jagunal homolog 1 is a critical regulator of neutrophil function in fungal host defense. Nat Genet. 2014 Sep;46(9):1028-33
All references(33)
Other
accession IDs
MGI:2141660

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/16/2014
MGI 5.20
The Jackson Laboratory