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Eepd1 Gene Detail
Summary
  • Symbol
    Eepd1
  • Name
    endonuclease/exonuclease/phosphatase family domain containing 1
  • Synonyms
    2310005P05Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914734
    NCBI Gene: 67484
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:25481547-25604110 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 10.25 cM, cytoband A4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    775 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914734
protein coding gene Chr9:25481524-25604110 (.)
129S1/SvImJ MGP_129S1SvImJ_G0034498
protein coding gene Chr9:22906835-23033152 (+)
A/J MGP_AJ_G0034476
protein coding gene Chr9:22426377-22545999 (+)
AKR/J MGP_AKRJ_G0034402
protein coding gene Chr9:22843930-22972910 (+)
BALB/cJ MGP_BALBcJ_G0034467
protein coding gene Chr9:22308062-22432123 (+)
C3H/HeJ MGP_C3HHeJ_G0034179
protein coding gene Chr9:23184229-23312139 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034988
protein coding gene Chr9:23792354-23918305 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031918
protein coding gene Chr9:21379536-21496052 (+)
CAST/EiJ MGP_CASTEiJ_G0033502
protein coding gene Chr9:23073457-23202951 (+)
CBA/J MGP_CBAJ_G0034152
protein coding gene Chr9:24661618-24798315 (+)
DBA/2J MGP_DBA2J_G0034310
protein coding gene Chr9:22402630-22522240 (+)
FVB/NJ MGP_FVBNJ_G0034253
protein coding gene Chr9:21878944-21998568 (+)
LP/J MGP_LPJ_G0034396
protein coding gene Chr9:23085450-23209770 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034297
protein coding gene Chr9:26295095-26417940 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0035008
protein coding gene Chr9:22838511-22966399 (+)
PWK/PhJ MGP_PWKPhJ_G0033207
protein coding gene Chr9:22346386-22466923 (+)
SPRET/EiJ MGP_SPRETEiJ_G0033041
protein coding gene Chr9:22886722-23014251 (+)
WSB/EiJ MGP_WSBEiJ_G0033617
protein coding gene Chr9:22555426-22678095 (+)



Homology
more
  • Human Ortholog
    EEPD1, endonuclease/exonuclease/phosphatase family domain containing 1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    EEPD1, endonuclease/exonuclease/phosphatase family domain containing 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    HSPC107
  • Links
    NCBI Gene ID: 80820
    neXtProt AC: NX_Q7L9B9
    UniProt: Q7L9B9

  • Chr Location
    7p14.2; chr7:36153149-36301543 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 12144
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: EEPD1
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000036611 Ensembl Gene Model | MGI Sequence Detail 122564 C57BL/6J ±  kb
transcript ENSMUST00000040677 Ensembl | MGI Sequence Detail 2723 Not Applicable  
polypeptide ENSMUSP00000047083 Ensembl | MGI Sequence Detail 569 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000032525 endonuclease/exonuclease/phosphatase family domain-containing protein 1
  • InterPro Domains
    IPR004509 Competence protein ComEA, helix-hairpin-helix domain
    IPR036691 Endonuclease/exonuclease/phosphatase superfamily
    IPR003583 Helix-hairpin-helix DNA-binding motif, class 1
    IPR010994 RuvA domain 2-like
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 4
Other
Accession IDs
less
MGI:2143081
References
more
  • Summaries
    All 27
    Developmental Gene Expression 2
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:259186 Heng X, et al., Analogous mechanism regulating formation of neocortical basal radial glia and cerebellar Bergmann glia. Elife. 2017 May 10;6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory