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Snrpd3 Gene Detail
Summary
  • Symbol
    Snrpd3
  • Name
    small nuclear ribonucleoprotein D3
  • Synonyms
    1700043E15Rik, 2310009E13Rik, SMD3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914582
    NCBI Gene: 67332
  • Gene Overview
    MyGene.info: SNRPD3
  • Alliance
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:75518042-75535440 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 38.55 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    84 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914582
protein coding gene Chr10:75517551-75537381 (.)
129S1/SvImJ MGP_129S1SvImJ_G0017356
protein coding gene Chr10:75692972-75712875 (+)
A/J MGP_AJ_G0017333
protein coding gene Chr10:73096246-73116082 (+)
AKR/J MGP_AKRJ_G0017294
protein coding gene Chr10:75057942-75077762 (+)
BALB/cJ MGP_BALBcJ_G0017293
protein coding gene Chr10:73290248-73310085 (+)
C3H/HeJ MGP_C3HHeJ_G0017117
protein coding gene Chr10:75094906-75114725 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017751
protein coding gene Chr10:78376817-78396645 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015441
protein coding gene Chr10:69555132-69574686 (+)
CAST/EiJ MGP_CASTEiJ_G0016688
protein coding gene Chr10:75407895-75428960 (+)
CBA/J MGP_CBAJ_G0017089
protein coding gene Chr10:81441582-81461399 (+)
DBA/2J MGP_DBA2J_G0017194
protein coding gene Chr10:72395633-72415504 (+)
FVB/NJ MGP_FVBNJ_G0017187
protein coding gene Chr10:71534822-71554469 (+)
LP/J MGP_LPJ_G0017267
protein coding gene Chr10:76181024-76203235 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017215
protein coding gene Chr10:83543195-83563049 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017790
protein coding gene Chr10:75079963-75100555 (+)
PWK/PhJ MGP_PWKPhJ_G0016471
protein coding gene Chr10:72218219-72239225 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016254
protein coding gene Chr10:74329028-74348421 (+)
WSB/EiJ MGP_WSBEiJ_G0016751
protein coding gene Chr10:75054696-75074282 (+)



Homology
more
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Sm-D3, SMD3
  • Links
    NCBI Gene ID: 6634
    neXtProt AC: NX_P62318
    UniProt: P62318

  • Chr Location
    22q11.23; chr22:24555650-24574964 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 3078
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: SNRPD3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67332 NCBI Gene Model | MGI Sequence Detail 17399 C57BL/6J ±  kb
transcript NM_026095 RefSeq | MGI Sequence Detail 604 C57BL/6  
polypeptide P62320 UniProt | EBI | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 11

    Microarray probesets 6
Other
Accession IDs
less
MGI:1925629, MGI:2143794
References
more
  • Summaries
    All 44
    Developmental Gene Expression 2
    Gene Ontology 9
    Phenotypes 10
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:189260 Scruggs BS, et al., SmD3 Regulates Intronic Noncoding RNA Biogenesis. Mol Cell Biol. 2012 Oct;32(20):4092-103

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory