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Snrpd3 Gene Detail
Summary
  • Symbol
    Snrpd3
  • Name
    small nuclear ribonucleoprotein D3
  • Synonyms
    1700043E15Rik, 2310009E13Rik, SMD3
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914582
    NCBI Gene: 67332
  • Gene Overview
    MyGene.info: SNRPD3
Location & Maps
more
  • Sequence Map
    Chr10:75517551-75537373 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      19823 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 38.55 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SNRPD3, small nuclear ribonucleoprotein D3 polypeptide
    Orthology source: HomoloGene, HGNC
  • Synonyms
    Sm-D3, SMD3
  • Links
    NCBI Gene ID: 6634
    neXtProt AC: NX_P62318

  • Chr Location
    22q11.23; chr22:24555650-24574964 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 3078
    1 human;1 mouse;1 rat;1 chimpanzee;1 rhesus macaque;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed
  • HCOP
    human homology predictions: SNRPD3
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    10 phenotype references
  • All Mutations and Alleles
    21
  • Chemically induced (other)
    1
  • Gene trapped
    20
  • Genomic Mutations
    1 involving Snrpd3
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000046606 VEGA Gene Model | MGI Sequence Detail 19823 C57BL/6J ±  kb
transcript OTTMUST00000121168 VEGA | MGI Sequence Detail 3028 Not Applicable  
polypeptide OTTMUSP00000066863 VEGA | MGI Sequence Detail 126 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    89 from dbSNP Build 142
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000015345 small nuclear ribonucleoprotein Sm D3
  • InterPro Domains
    IPR027141 Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3
    IPR010920 LSM domain
    IPR001163 LSM domain, eukaryotic/archaea-type
Molecular
Reagents
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  • All nucleic 9
    cDNA 9

    Microarray probesets 6
Other
Accession IDs
less
MGI:1925629, MGI:2143794
References
more
  • Summaries
    All 36
    Developmental Gene Expression 2
    Gene Ontology 8
    Phenotypes 10
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:189260 Scruggs BS, et al., SmD3 Regulates Intronic Noncoding RNA Biogenesis. Mol Cell Biol. 2012 Oct;32(20):4092-103

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
09/20/2016
MGI 6.05
The Jackson Laboratory