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Pagr1a Gene Detail
Summary
  • Symbol
    Pagr1a
  • Name
    PAXIP1 associated glutamate rich protein 1A
  • Synonyms
    2900092E17Rik, C77040, PA1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914528
    NCBI Gene: 67278
  • Alliance
    gene page
  • Transcription Start Sites
    10 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:126614223-126616524 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 69.27 cM, cytoband F4
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    16 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914528
 protein coding gene Chr7:126614205-126616524 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033014
 protein coding gene Chr7:131329225-131331544 (-)
A/J MGP_AJ_G0032997
 protein coding gene Chr7:127842630-127844949 (-)
AKR/J MGP_AKRJ_G0032929
 protein coding gene Chr7:131078313-131080632 (-)
BALB/cJ MGP_BALBcJ_G0033002
 protein coding gene Chr7:127506052-127508371 (-)
C3H/HeJ MGP_C3HHeJ_G0032712
 protein coding gene Chr7:131020777-131023096 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033508
 protein coding gene Chr7:136433541-136435860 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030480
 protein coding gene Chr7:129055079-129057373 (-)
CAST/EiJ MGP_CASTEiJ_G0032041
 protein coding gene Chr7:122810339-122812656 (-)
CBA/J MGP_CBAJ_G0032685
 protein coding gene Chr7:141021451-141023770 (-)
DBA/2J MGP_DBA2J_G0032837
 protein coding gene Chr7:125816684-125819003 (-)
FVB/NJ MGP_FVBNJ_G0032790
 protein coding gene Chr7:125668009-125670328 (-)
LP/J MGP_LPJ_G0032931
 protein coding gene Chr7:132799800-132802119 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0032822
 protein coding gene Chr7:142187344-142189663 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033527
 protein coding gene Chr7:130094932-130097251 (-)
PWK/PhJ MGP_PWKPhJ_G0031748
 protein coding gene Chr7:118813327-118815646 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031594
 protein coding gene Chr7:116935695-116938049 (-)
WSB/EiJ MGP_WSBEiJ_G0032153
 protein coding gene Chr7:131070571-131072890 (-)



Homology
more
  • Human Ortholog
    PAGR1, PAXIP1 associated glutamate rich protein 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PAGR1, PAXIP1 associated glutamate rich protein 1
  • Synonyms
    C16orf53, GAS, PA1
  • Links
    NCBI Gene ID: 79447
    neXtProt AC: NX_Q9BTK6
    UniProt: Q9BTK6

  • Chr Location
    16p11.2; chr16:29816152-29822489 (+)  GRCh38
Human Diseases
less
  • References
    3 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotypes from 1 allele in 1 genetic background
    39 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele fail to undergo axial rotation and show abnormal embryonic and extraembryonic tissue development, defects in amnion, chorion and visceral yolk sac morphology, abnormal rostral-caudal body axis extension, growth arrest, and complete embryonic lethality.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    726
  • Tissues
    11
  • cDNA Data
    64
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 67278 NCBI Gene Model | MGI Sequence Detail 2302 C57BL/6J ±  kb
    transcript NM_030240 RefSeq | MGI Sequence Detail 1448 Not Specified  
    polypeptide Q99L02 UniProt | EBI | MGI Sequence Detail 253 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 64
      cDNA 64

      Microarray probesets 7
    Other
    Accession IDs
    less
    MGI:2142311
    References
    more
    • Summaries
      All 68
      Developmental Gene Expression 1
      Diseases 3
      Gene Ontology 8
      Phenotypes 39
    • Earliest
      J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
    • Latest
      J:342026 Hasegawa Y, et al., Microglial cannabinoid receptor type 1 mediates social memory deficits in mice produced by adolescent THC exposure and 16p11.2 duplication. Nat Commun. 2023 Oct 25;14(1):6559
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/09/2024
    MGI 6.23     		The Jackson Laboratory