About   Help   FAQ
Pagr1a Gene Detail
Summary
  • Symbol
    Pagr1a
  • Name
    PAXIP1 associated glutamate rich protein 1A
  • Synonyms
    2900092E17Rik, C77040, PA1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914528
    NCBI Gene: 67278
Location & Maps
more
  • Sequence Map
    Chr7:127015033-127017352 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      2320 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 69.27 cM, cytoband F4
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PAGR1, PAXIP1 associated glutamate rich protein 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    PAGR1, PAXIP1 associated glutamate rich protein 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    C16orf53, GAS, PA1
  • Links
    NCBI Gene ID: 79447
    neXtProt AC: NX_Q9BTK6

  • Chr Location
    16p11.2; chr16:29816207-29822495 (+)  GRCh38.p2

Human Diseases
less
  • References
    6 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    11 phenotype references
  • All Mutations and Alleles
    7
  • Targeted
    7
  • Genomic Mutations
    3 involving Pagr1a
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
  • Literature Summary
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000033691 VEGA Gene Model | MGI Sequence Detail 2320 C57BL/6J ±  kb
transcript OTTMUST00000084868 VEGA | MGI Sequence Detail 1430 Not Applicable  
polypeptide OTTMUSP00000045784 VEGA | MGI Sequence Detail 253 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    16 from dbSNP Build 142
Protein
Information
less
  • Protein Ontology
    PR:000012201 PAXIP1-associated glutamate-rich protein 1
Molecular
Reagents
less
  • All nucleic 61
    cDNA 61

    Microarray probesets 7
Other
Accession IDs
less
MGI:2142311
References
more
  • Summaries
    All 28
    Developmental Gene Expression 1
    Diseases 6
    Gene Ontology 4
    Phenotypes 11
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:229465 Starnes LM, et al., A PTIP-PA1 subcomplex promotes transcription for IgH class switching independently from the associated MLL3/MLL4 methyltransferase complex. Genes Dev. 2016 Jan 15;30(2):149-63

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
07/19/2016
MGI 6.04
The Jackson Laboratory