Pagr1a
Gene Detail

Symbol Name ID

Pagr1a PAXIP1 associated glutamate rich protein 1A MGI:1914528

Synonyms

2900092E17Rik, C77040, PA1

Feature Type

protein coding gene

Genetic Map

Chromosome 7

69.27 cM, cytoband F4
Detailed Genetic Map ± 1 cM


Mapping data(3)

Sequence Map

Chr7:127001482-127020327 bp, - strand From VEGA annotation of GRCm38   18846 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:11563  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Gene Tree: Pagr1a

Human homologs

Human Homolog		PAGR1, PAXIP1 associated glutamate-rich protein 1
NCBI Gene ID		79447
neXtProt AC		NX_Q9BTK6
Human Synonyms		C16orf53, GAS, PA1
Human Chr (Location)		16p11.2; chr16:29827528-29833816 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(9) : Targeted(3) Gene trapped(6)

Gene Ontology (GO) classifications

All GO classifications: (5 annotations)

Process	histone H3-K27 demethylation
Component	histone methyltransferase complex, nucleus
Function	protein binding

External Resources: FuncBase

Expression

cDNA source data(61)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(61) cDNA(61)
Microarray probesets(7)

Other database links

VEGA Gene Model	OTTMUSG00000033691 (Evidence)
Ensembl Gene Model	ENSMUSG00000030680 (Evidence)
Entrez Gene	67278 (Evidence)
UniGene	345385
Consensus CDS Project	CCDS21854.1
International Mouse Knockout Project Status	Pagr1a

Sequences

Length	Strain/Species
genomic	OTTMUSG00000033691	VEGA Gene Model | MGI Sequence Detail	18846	C57BL/6J
transcript	OTTMUST00000084868	VEGA | MGI Sequence Detail	4405	Not Applicable
polypeptide	OTTMUSP00000045784	VEGA | MGI Sequence Detail	253	Not Applicable

All sequences(23) RefSeq(2)

Polymorphisms

SNPs(16 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
Protein Ontology	PR:000012201	PAXIP1-associated protein 1

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:190157 Wang C, et al., UTX regulates mesoderm differentiation of embryonic stem cells independent of H3K27 demethylase activity. Proc Natl Acad Sci U S A. 2012 Sep 18;109(38):15324-9
All references(28)

Other accession IDs

MGI:2142311