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Sgms1os1 Gene Detail
Summary
  • Symbol
    Sgms1os1
  • Name
    Sgms1 opposite strand transcript 1
  • Synonyms
    2700046G09Rik
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1914438
    NCBI Gene: 67188
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:32366616-32368584 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 19, 27.10 cM, cytoband C3
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    32 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914438
 lncRNA gene Chr19:32366591-32368705 (+)
129S1/SvImJ MGP_129S1SvImJ_G0005825
 lincRNA gene Chr19:31023768-31025735 (+)
A/J MGP_AJ_G0005816
 lincRNA gene Chr19:29475018-29476985 (+)
AKR/J MGP_AKRJ_G0005792
 lincRNA gene Chr19:30502141-30504108 (+)
BALB/cJ MGP_BALBcJ_G0005795
 lincRNA gene Chr19:29532573-29534540 (+)
C3H/HeJ MGP_C3HHeJ_G0005743
 lincRNA gene Chr19:30496518-30498485 (+)
C57BL/6NJ MGP_C57BL6NJ_G0005955
 lincRNA gene Chr19:31877963-31879931 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005296
 lincRNA gene Chr19:29383238-29385211 (+)
CAST/EiJ MGP_CASTEiJ_G0005681
 lincRNA gene Chr19:30403121-30405088 (+)
CBA/J MGP_CBAJ_G0005728
 lincRNA gene Chr19:33360983-33362950 (+)
DBA/2J MGP_DBA2J_G0005748
 lincRNA gene Chr19:29399567-29401534 (+)
FVB/NJ MGP_FVBNJ_G0005775
 lincRNA gene Chr19:29225775-29227742 (+)
LP/J MGP_LPJ_G0005829
 lincRNA gene Chr19:31028531-31030498 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0005761
 lincRNA gene Chr19:33236256-33238223 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0005953
 lincRNA gene Chr19:30553340-30555308 (+)
PWK/PhJ MGP_PWKPhJ_G0005628
 lincRNA gene Chr19:29097318-29099283 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005542
 lincRNA gene Chr19:29886896-29888862 (+)
WSB/EiJ MGP_WSBEiJ_G0005735
 lincRNA gene Chr19:30590023-30591990 (+)



Homology
more
  • Human Ortholog
    SGMS1-AS1, SGMS1 antisense RNA 1
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SGMS1-AS1, SGMS1 antisense RNA 1
  • Links
    NCBI Gene ID: 104355295

  • Chr Location
    10q11.23; chr10:50623466-50641451 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    13
Sequences &
Gene Models
less
  • All Sequences
    31
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 67188 NCBI Gene Model | MGI Sequence Detail 1969 C57BL/6J ±  kb
transcript NR_033198 RefSeq | MGI Sequence Detail 1641 C57BL/6  
polypeptide Q8CBN0 UniProt | EBI | MGI Sequence Detail 140 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 13
    cDNA 13

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Gene Ontology 1
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:201967 Lin ST, et al., MicroRNA-23a promotes myelination in the central nervous system. Proc Natl Acad Sci U S A. 2013 Oct 22;110(43):17468-73
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory