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Pxdc1 Gene Detail
Summary
  • Symbol
    Pxdc1
  • Name
    PX domain containing 1
  • Synonyms
    1300014I06Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914145
    NCBI Gene: 66895
Location & Maps
more
  • Sequence Map
    Chr13:34627840-34652681 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      24842 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 14.16 cM, cytoband A4
  • Detailed Genetic Map ± 1 cM
  • Mapping Data
    3 experiments
Homology
more
  • Human Ortholog
    PXDC1, PX domain containing 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    PXDC1, PX domain containing 1
    Orthology source: HomoloGene
  • Synonyms
    C6orf145
  • Links
    NCBI Gene ID: 221749
    neXtProt AC: NX_Q5TGL8

  • Chr Location
    6p25.2; chr6:3722602-3752012 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Targeted
    4
  • Genomic Mutations
    2 involving Pxdc1
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027717 VEGA Gene Model | MGI Sequence Detail 24842 C57BL/6J ±  kb
transcript OTTMUST00000068592 VEGA | MGI Sequence Detail 1863 Not Applicable  
polypeptide OTTMUSP00000034715 VEGA | MGI Sequence Detail 231 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    308 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000030765 PX domain-containing protein 1
  • InterPro Domains
    IPR001683 Phox homologous domain
Molecular
Reagents
less
  • All nucleic 39
    cDNA 39

    Microarray probesets 4
References
more
  • Summaries
    All 25
    Gene Ontology 1
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
05/24/2016
MGI 6.04
The Jackson Laboratory