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Pxdc1
Gene Detail
Symbol

Name
ID
Pxdc1
PX domain containing 1
MGI:1914145
Synonyms
1300014I06Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 13
14.16 cM, cytoband A4
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr13:34627840-34652681 bp, - strand
From VEGA annotation of GRCm38

  24842 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:12051  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: PXDC1
Gene Tree: Pxdc1

Human
homologs
PXDC1, PX domain containing 1
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 221749
neXtProt AC: NX_Q5TGL8

Human Synonyms: C6orf145

Human Chr (Location): 6p25.2; chr6:3722602-3752012 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(5) : Radiation induced(1) Targeted(4)
Genomic Mutations involving Pxdc1 (1)
Interactions
Pxdc1 interacts with 155 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component cellular_component
Function phosphatidylinositol binding
External Resources: FuncBase
Expression
cDNA source data(39)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase pxdc1    NEW 
Molecular
reagents
All nucleic(39) cDNA(39)
Microarray probesets(4)
Other database
links
VEGA Gene Model OTTMUSG00000027717 (Evidence)
Ensembl Gene Model ENSMUSG00000021411 (Evidence)
Entrez Gene 66895 (Evidence)
UniGene 28943
DFCI TC1592468, TC1581947
DoTS DT.101364291, DT.530384
NIA Mouse Gene Index U034680
Consensus CDS Project CCDS36632.1
International Mouse Phenotyping Consortium Status Pxdc1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000027717 VEGA Gene Model | MGI Sequence Detail 24842 C57BL/6J ±  kb
transcript OTTMUST00000068592 VEGA | MGI Sequence Detail 1863 Not Applicable 
polypeptide OTTMUSP00000034715 VEGA | MGI Sequence Detail 231 Not Applicable 

For the selected sequences
All sequences(40) RefSeq(5) UniProt(3)
Polymorphisms
SNPs within 2kb(300 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001683 Phox homologous domain
Protein Ontology PR:000030765 PX domain-containing protein 1
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory