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Vps9d1
Gene Detail
 Symbol
Name
ID
Vps9d1
VPS9 domain containing 1
MGI:1914143
Synonyms 1300018I17Rik, 2410004N05Rik
Feature Type protein coding gene
Genetic Map
Chromosome 8
72.09 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:123242356-123254348 bp, - strand
From VEGA annotation of GRCm38

  11993 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21021  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

Gene Tree: Vps9d1

Human
homologs
Human Homolog VPS9D1, VPS9 domain containing 1
NCBI Gene ID 9605
neXtProt AC  NX_Q9Y2B5
Human Synonyms  ATP-BL, C16orf7
Human Chr (Location)  16q24; chr16:89707133-89720986 (-)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from APF )
Interactions
Vps9d1 interacts with 230 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Process biological_process
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (69)    Tissues (8)    Images (23)
Theiler Stages: 23
Assay TypeResults
RNA in situ 69
cDNA source data(41)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(41) cDNA(41)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000030130 (Evidence)
Ensembl Gene ModelENSMUSG00000001062 (Evidence)
Entrez Gene72325 (Evidence)
UniGene276193
DFCITC1576467, TC1595293, TC1614640, TC1617264, TC1625677, TC1724445
NIA Mouse Gene IndexU030372
Consensus CDS ProjectCCDS52698.1
International Mouse Knockout Project StatusVps9d1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030130 VEGA Gene Model | MGI Sequence Detail 11993 C57BL/6J ±  kb
transcript OTTMUST00000074630 VEGA | MGI Sequence Detail 2783 Not Applicable 
polypeptide OTTMUSP00000038947 VEGA | MGI Sequence Detail 650 Not Applicable 

For the selected sequences
All sequences(74) RefSeq(4) UniProt(4)
Polymorphisms SNPs within 2kb(128 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007330 MIT
InterPro IPR003123 Vacuolar sorting protein 9
References (Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(27)
Other
accession IDs
MGI:1919575

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory