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Vps9d1
Gene Detail
Symbol

Name
ID
Vps9d1
VPS9 domain containing 1
MGI:1914143
Synonyms
1300018I17Rik, 2410004N05Rik
Feature Type
protein coding gene
Genetic Map
Chromosome 8
72.09 cM, cytoband E2
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr8:123242356-123254348 bp, - strand
From VEGA annotation of GRCm38

  11993 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:21021  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: VPS9D1
Gene Tree: Vps9d1

Human
homologs
VPS9D1, VPS9 domain containing 1
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 9605
neXtProt AC: NX_Q9Y2B5

Human Synonyms: ATP-BL, C16orf7

Human Chr (Location): 16q24; chr16:89707133-89721272 (-)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(2) : Targeted(2)
Incidental mutations (data from APF , CvDC )
Interactions
Vps9d1 interacts with 230 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (2 annotations)
Process biological_process
Function molecular_function
External Resources: FuncBase
Expression
Literature Summary: (2 records)
Data Summary: Results (69)    Tissues (8)    Images (23)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 69
cDNA source data(41)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase vps9d1 ; ZFIN vps9d1    NEW 
Molecular
reagents
All nucleic(41) cDNA(41)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000030130 (Evidence)
Ensembl Gene Model ENSMUSG00000001062 (Evidence)
Entrez Gene 72325 (Evidence)
UniGene 276193
DFCI TC1576467, TC1595293, TC1614640, TC1617264, TC1625677, TC1724445
NIA Mouse Gene Index U030372
Consensus CDS Project CCDS52698.1, CCDS80942.1
International Mouse Phenotyping Consortium Status Vps9d1
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000030130 VEGA Gene Model | MGI Sequence Detail 11993 C57BL/6J ±  kb
transcript OTTMUST00000074630 VEGA | MGI Sequence Detail 2783 Not Applicable 
polypeptide OTTMUSP00000038947 VEGA | MGI Sequence Detail 650 Not Applicable 

For the selected sequences
All sequences(80) RefSeq(10) UniProt(4)
Polymorphisms
SNPs within 2kb(128 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR007330 MIT
InterPro IPR003123 VPS9 domain
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(26)
Other
accession IDs
MGI:1919575

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory