Znrd1
Gene Detail

Symbol Name ID

Znrd1 zinc ribbon domain containing, 1 MGI:1913386

Synonyms

1110014N07Rik

Feature Type

protein coding gene

Genetic Map

Chromosome 17

19.16 cM, cytoband B3
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr17:36954358-36958559 bp, - strand From VEGA annotation of GRCm38   4202 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:40960  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 zebrafish

Protein SuperFamily: RNApol_RpoM
Gene Tree: Znrd1

Human homologs

Human Homolog		ZNRD1, zinc ribbon domain containing 1
NCBI Gene ID		30834
neXtProt AC		NX_Q9P1U0
Human Synonyms		HTEX-6, hZR14, Rpa12, tctex-6, TEX6
Human Chr (Location)		6p21.3; chr6:30029036-30032686 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(12) : Targeted(2) Gene trapped(10)

Gene Ontology (GO) classifications

All GO classifications: (8 annotations)

Process	transcription, DNA-dependent
Component	nucleus
Function	DNA-directed RNA polymerase activity, metal ion binding, ...

External Resources: FuncBase

Expression

Literature Summary: (4 records)
Data Summary: Results (137)    Tissues (126)    Images (2)
Theiler Stages: 2, 3, 4, 5, 15, 17, 19, 22, 23, 28

Assay Type	Results
RNA in situ	122
RT-PCR	15

cDNA source data(65)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(67) cDNA(65) Primer pair(2)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000037385 (Evidence)
Ensembl Gene Model	ENSMUSG00000036315 (Evidence)
Entrez Gene	66136 (Evidence)
UniGene	440038
DFCI	TC1578925, TC1589015, TC1740844
DoTS	DT.101374104, DT.494455, DT.94293996
NIA Mouse Gene Index	U037778
Consensus CDS Project	CCDS28730.1
International Mouse Knockout Project Status	Znrd1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000037385	VEGA Gene Model | MGI Sequence Detail	4202	C57BL/6J
transcript	OTTMUST00000096459	VEGA | MGI Sequence Detail	740	Not Applicable
polypeptide	OTTMUSP00000053898	VEGA | MGI Sequence Detail	123	Not Applicable

All sequences(36) RefSeq(2) UniProt(2)

Polymorphisms

SNPs(3 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR019761	DNA-directed RNA polymerase M, 15kDa subunit, conserved site
InterPro	IPR012164	DNA-directed RNA polymerase, subunit C11/M/9
InterPro	IPR001222	Zinc finger, TFIIS-type
Protein Ontology	PR:000018205	DNA-directed RNA polymerase I subunit RPA12

References

(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)