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1110008L16Rik
Gene Detail
Symbol

Name
ID
1110008L16Rik
RIKEN cDNA 1110008L16 gene
MGI:1913382
Feature Type
protein coding gene
Genetic Map
Chromosome 12
23.91 cM, cytoband C1
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr12:55299577-55382533 bp, + strand
From VEGA annotation of GRCm38

  82957 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:45935  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 1 western clawed frog; 1 zebrafish

HCOP human homology predictions: KIAA0391
Gene Tree: 1110008L16Rik

Human
homologs
KIAA0391, KIAA0391
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 9692
neXtProt AC: NX_O15091

Human Synonyms: MRPP3, PRORP

Human Chr (Location): 14q13.2; chr14:35121283-35274078 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(65) : Gene trapped(65)
Incidental mutations (data from Mutagenetix , APF )
Interactions
1110008L16Rik interacts with 32 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process tRNA processing
Component mitochondrial nucleoid, mitochondrion
Function molecular_function
External Resources: FuncBase
Expression
cDNA source data(33)
Other mouse links: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(34) cDNA(34)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000044896 (Evidence)
Ensembl Gene Model ENSMUSG00000021023 (Evidence)
Entrez Gene 66132 (Evidence)
UniGene 383213
DFCI TC1579700
NIA Mouse Gene Index U013963
Consensus CDS Project CCDS49068.1
International Mouse Phenotyping Consortium Status 1110008L16Rik
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000044896 VEGA Gene Model | MGI Sequence Detail 82957 C57BL/6J ±  kb
transcript OTTMUST00000117992 VEGA | MGI Sequence Detail 3122 Not Applicable 
polypeptide OTTMUSP00000065902 VEGA | MGI Sequence Detail 584 Not Applicable 

For the selected sequences
All sequences(48) RefSeq(2) UniProt(4)
Polymorphisms
SNPs within 2kb(338 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR021869 Ribonuclease Zc3h12a-like
References
(Earliest) J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
(Latest) J:213151 Bogenhagen DF, et al., Initial steps in RNA processing and ribosome assembly occur at mitochondrial DNA nucleoids. Cell Metab. 2014 Apr 1;19(4):618-29
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
07/21/2015
MGI 5.22
The Jackson Laboratory