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Vamp5
Gene Detail
Symbol

Name
ID
Vamp5
vesicle-associated membrane protein 5
MGI:1858622
Synonyms
Camp
Feature Type
protein coding gene
Genetic Map
Chromosome 6
32.27 cM, cytoband C3
Detailed Genetic Map ± 1 cM


Mapping data(2)
Sequence Map
Chr6:72368049-72380468 bp, - strand
From NCBI annotation of GRCm38

  12420 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:4833  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: VAMP5
Protein SuperFamily: synaptobrevin
Gene Tree: Vamp5

Human
homologs
VAMP5, vesicle-associated membrane protein 5
Orthology source: HGNC, HomoloGene

IDs:
NCBI Gene ID: 10791
neXtProt AC: NX_O95183

Human Chr (Location): 2p11.2; chr2:85584408-85593388 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(4) : Spontaneous(1) Targeted(3)
Genomic Mutations involving Vamp5 (1)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Vamp5 interacts with 189 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (29 annotations)
Process cell differentiation, exocytosis, ...
Component cell, cell surface, ...
Function SNAP receptor activity, SNARE binding
External Resources: FuncBase
Expression
cDNA source data(14)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100495353 ; ZFIN vamp5    NEW 
Molecular
reagents
All nucleic(15) cDNA(15)
Microarray probesets(4)
Other database
links
Ensembl Gene Model ENSMUSG00000073002 (Evidence)
Entrez Gene 53620 (Evidence)
UniGene 440321
DFCI TC1586304, TC1592270, TC1592319
DoTS DT.40143945, DT.528886, DT.97405080
NIA Mouse Gene Index U027472
Consensus CDS Project CCDS39513.1
International Mouse Phenotyping Consortium Status Vamp5
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic 53620 NCBI Gene Model | MGI Sequence Detail 12420 C57BL/6J ±  kb
transcript NM_016872 RefSeq | MGI Sequence Detail 1648 C57BL/6 
polypeptide Q9Z2P8 UniProt | EBI | MGI Sequence Detail 102 Not Applicable 

For the selected sequences
All sequences(35) RefSeq(8) UniProt(5)
Polymorphisms
SNPs within 2kb(247 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR001388 Synaptobrevin
InterPro IPR016444 Synaptobrevin/Vesicle-associated membrane protein
Protein Ontology PR:000017252 vesicle-associated membrane protein 5
Graphical View of Protein Domain Structure
References
(Earliest) J:62055 Zeng Q, et al., A novel synaptobrevin/VAMP homologous protein (VAMP5) is increased during in vitro myogenesis and present in the plasma membrane. Mol Biol Cell. 1998 Sep;9(9):2423-37
(Latest) J:209474 Takahashi M, et al., The localization of VAMP5 in skeletal and cardiac muscle. Histochem Cell Biol. 2013 Apr;139(4):573-82
All references(34)
Other
accession IDs
MGI:2158647

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory