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Exosc9 Gene Detail
Summary
  • Symbol
    Exosc9
  • Name
    exosome component 9
  • Synonyms
    p5, p6, Pmscl1, PM/Scl-75, RRP45
  • Feature Type
    protein coding gene
  • IDs
    MGI:1355319
    NCBI Gene: 50911
  • Gene Overview
    MyGene.info: EXOSC9
Location & Maps
more
  • Sequence Map
    Chr3:36552606-36565727 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      13122 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 17.60 cM
  • Mapping Data
    2 experiments
Homology
more
  • Human Ortholog
    EXOSC9, exosome component 9
  • Vertebrate Orthologs
    10
  • Human Ortholog
    EXOSC9, exosome component 9
    Orthology source: HomoloGene, HGNC
  • Synonyms
    p5, p6, PMSCL1, PM/Scl-75, RRP45, Rrp45p
  • Links
    NCBI Gene ID: 5393
    neXtProt AC: NX_Q06265

  • Chr Location
    4q27; chr4:121801295-121817021 (+)  GRCh38.p2

  • HomoloGene
    Vertebrate Homology Class 3693
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: EXOSC9
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    16
  • Gene trapped
    11
  • Radiation induced
    2
  • Targeted
    3
  • Genomic Mutations
    2 involving Exosc9
  • Incidental Mutations
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000002113 VEGA Gene Model | MGI Sequence Detail 13122 C57BL/6J ±  kb
transcript OTTMUST00000004267 VEGA | MGI Sequence Detail 1617 Not Applicable  
polypeptide OTTMUSP00000002019 VEGA | MGI Sequence Detail 438 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    258 from dbSNP Build 142
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 13
    cDNA 12
    Primer pair 1

    Microarray probesets 2
References
more
  • Summaries
    All 33
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 13
  • Earliest
    J:61080 Bliskovski V, et al., Structure and localization of mouse pmscl1 and pmscl2 genes. Genomics. 2000 Feb 15;64(1):106-10
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory