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Ddx3y
Gene Detail
 Symbol
Name
ID
Ddx3y
DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
MGI:1349406
Synonyms 8030469F12Rik, D1Pas1-rs1, Dby
Feature Type protein coding gene
Genetic Map
Chromosome Y
cytoband p

Mapping data(2)
Sequence Map
ChrY:1260771-1286629 bp, - strand
From VEGA annotation of GRCm38

  25859 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:55839  Vertebrate Homology Class
1 human; 1 mouse; 1 chimpanzee; 1 cattle

Protein SuperFamily: ATP-dependent RNA helicase
Gene Tree: Ddx3y

Human
homologs
Human Homolog DDX3Y, DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
NCBI Gene ID 8653
neXtProt AC  NX_O15523
Human Synonyms  DBY
Human Chr (Location)  Yq11; chrY:12903985-12920478 (+)  GRCh38
Disease Associations  (1) Diseases Associated with Human DDX3Y
Mutations,
alleles, and
phenotypes
All mutations/alleles(6) : Gene trapped(4) Targeted(2)
Incidental mutations (data from Mutagenetix )
Interactions
Ddx3y interacts with 376 markers (Mir1a-1, Mir1a-2, Mir1b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Component cytoplasm, membrane, ...
Function ATP binding, helicase activity, ...
External Resources: FuncBase
Expression
Literature Summary: (6 records)
Data Summary: Results (23)    Tissues (11)    Images (1)
Theiler Stages: 21, 22, 27, 28
Assay TypeResults
Northern blot 7
RT-PCR 16
cDNA source data(56)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(61) Genomic(2) cDNA(56) Primer pair(2) Other(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000045279 (Evidence)
Ensembl Gene ModelENSMUSG00000069045 (Evidence)
Entrez Gene26900 (Evidence)
UniGene302938
DFCITC1577954, TC1712308
DoTSDT.40181125, DT.87072802, DT.94234119, DT.97393170
NIA Mouse Gene IndexU138825
EC3.6.4.13
Consensus CDS ProjectCCDS30543.1
International Mouse Knockout Project StatusDdx3y
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000045279 VEGA Gene Model | MGI Sequence Detail 25859 C57BL/6J ±  kb
transcript OTTMUST00000118924 VEGA | MGI Sequence Detail 4600 Not Applicable 
polypeptide OTTMUSP00000066311 VEGA | MGI Sequence Detail 658 Not Applicable 

For the selected sequences
All sequences(51) RefSeq(12) UniProt(3)
Polymorphisms SNPs within 2kb(45 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
InterPro IPR001650 Helicase, C-terminal
InterPro IPR014001 Helicase, superfamily 1/2, ATP-binding domain
InterPro IPR027417 P-loop containing nucleoside triphosphate hydrolase
InterPro IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
InterPro IPR014014 RNA helicase, DEAD-box type, Q motif
Protein Ontology PR:000006365 ATP-dependent RNA helicase DDX3Y
References (Earliest) J:17429 Gee SL, et al., Mouse erythroid cells express multiple putative RNA helicase genes exhibiting high sequence conservation from yeast to mammals. Gene. 1994 Mar 25;140(2):171-7
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(40)
Other
accession IDs
MGD-MRK-16301, MGI:1924744, MGI:99524

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/23/2014
MGI 5.19
The Jackson Laboratory