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Rorb Gene Detail
Summary
  • Symbol
    Rorb
  • Name
    RAR-related orphan receptor beta
  • Synonyms
    hstp, MGC:38728, Nr1f2, Rorbeta, RZR-beta
  • Feature Type
    protein coding gene
  • IDs
    MGI:1343464
    NCBI Gene: 225998
  • Alliance
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr19:18930609-19111196 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 19, 13.28 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1289 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1343464
protein coding gene Chr19:18930605-19111196 (-)
129S1/SvImJ MGP_129S1SvImJ_G0024971
protein coding gene Chr19:16825977-17010353 (-)
A/J MGP_AJ_G0024948
protein coding gene Chr19:15877560-16064842 (-)
AKR/J MGP_AKRJ_G0024918
protein coding gene Chr19:16506258-16686010 (-)
BALB/cJ MGP_BALBcJ_G0024947
protein coding gene Chr19:15907787-16087443 (-)
C3H/HeJ MGP_C3HHeJ_G0024705
protein coding gene Chr19:16454030-16643665 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025389
protein coding gene Chr19:17423137-17604833 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0022808
protein coding gene Chr19:16253187-16433068 (-)
CAST/EiJ MGP_CASTEiJ_G0024173
protein coding gene Chr19:16100128-16290005 (-)
CBA/J MGP_CBAJ_G0024683
protein coding gene Chr19:18074314-18273468 (-)
DBA/2J MGP_DBA2J_G0024815
protein coding gene Chr19:15908372-16089147 (-)
FVB/NJ MGP_FVBNJ_G0024776
protein coding gene Chr19:15814507-15995700 (-)
LP/J MGP_LPJ_G0024899
protein coding gene Chr19:16791325-16976091 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0024803
protein coding gene Chr19:17935660-18129699 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0025444
protein coding gene Chr19:16452066-16635929 (-)
PWK/PhJ MGP_PWKPhJ_G0023922
protein coding gene Chr19:15444259-15644585 (-)
SPRET/EiJ MGP_SPRETEiJ_G0023727
protein coding gene Chr19:15722878-15954021 (-)
WSB/EiJ MGP_WSBEiJ_G0024241
protein coding gene Chr19:16503561-16692599 (-)



Homology
more
  • Human Ortholog
    RORB, RAR related orphan receptor B
  • Vertebrate Orthologs
    10
  • Human Ortholog
    RORB, RAR related orphan receptor B
    Orthology source: HomoloGene, HGNC
  • Synonyms
    bA133M9.1, NR1F2, ROR-BETA, RZRB, RZR-BETA
  • Links
    NCBI Gene ID: 6096
    UniProt: Q92753

  • Chr Location
    9q21.13; chr9:74497336-74687201 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 38250
    1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: RORB
  • Gene Tree
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    40 phenotypes from 8 alleles in 8 genetic backgrounds
    23 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for disruptions in this gene have impaired vision and a variety of behavioral abnormalities.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 225998 NCBI Gene Model | MGI Sequence Detail 180588 C57BL/6J ±  kb
    transcript NM_001043354 RefSeq | MGI Sequence Detail 9289 C57BL/6  
    polypeptide Q8R1B8 UniProt | EBI | MGI Sequence Detail 470 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 21
      cDNA 18
      Primer pair 2
      Other 1

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGI:3838140
    References
    more
    • Summaries
      All 158
      Developmental Gene Expression 113
      Gene Ontology 11
      Phenotypes 23
    • Earliest
      J:48923 Andre E, et al., Disruption of retinoid-related orphan receptor beta changes circadian behavior, causes retinal degeneration and leads to vacillans phenotype in mice. EMBO J. 1998 Jul 15;17(14):3867-77
    • Latest
      J:263835 Newman EA, et al., Foxd1 is required for terminal differentiation of anterior hypothalamic neuronal subtypes. Dev Biol. 2018 Jul 15;439(2):102-111

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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    last database update
    11/06/2018
    MGI 6.13
    The Jackson Laboratory