Calcoco2
Gene Detail

Symbol Name ID

Calcoco2 calcium binding and coiled-coil domain 2 MGI:1343177

Synonyms

2410154J16Rik, Ndp52, Ndp52l1

Feature Type

protein coding gene

Genetic Map

Chromosome 11

59.40 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr11:96099326-96111964 bp, - strand From VEGA annotation of GRCm38   12639 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

Gene Tree: Calcoco2

Alleles and phenotypes

All alleles(64) : Targeted(2) Gene trapped(62)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Component

cytoplasm, cytoskeleton, ...

External Resources: FuncBase

Expression

Literature Summary: (1 records)
cDNA source data(66)
External Resources: GEO   ArrayExpress

Molecular reagents

All nucleic(75) Genomic(8) cDNA(66) Other(1)
Microarray probesets(3)

Other database links

VEGA Gene Model	OTTMUSG00000001956 (Evidence)
Ensembl Gene Model	ENSMUSG00000006056 (Evidence)
Entrez Gene	76815 (Evidence)
UniGene	296049
DFCI	TC1574990, TC1660457
DoTS	DT.101223268, DT.101377907, DT.110514117, DT.110514124, DT.110514127, DT.97393557, DT.97401993
NIA Mouse Gene Index	U033318
International Mouse Knockout Project Status	Calcoco2

Sequences

Length	Strain/Species
genomic	OTTMUSG00000001956	VEGA Gene Model | MGI Sequence Detail	12639	C57BL/6J
transcript	OTTMUST00000003920	VEGA | MGI Sequence Detail	1621	Not Applicable
polypeptide	OTTMUSP00000001897	VEGA | MGI Sequence Detail	331	Not Applicable

All sequences(44) RefSeq(4) UniProt(2)

Polymorphisms

SNPs(34 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR012852	Coiled-coil transcriptional coactivator-like
Protein Ontology	PR:000004971	calcium-binding and coiled-coil domain-containing protein 2

References

(Earliest) J:51104 Mohlke KL, et al., Comparative mapping of distal murine chromosome 11 and human 17q21.3 in a region containing a modifying locus for murine plasma von Willebrand factor level. Genomics. 1998 Nov 15;54(1):19-30
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)

Other accession IDs

MGI:1924065, MGI:2144626