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Calcoco2
Gene Detail
Symbol

Name
ID
Calcoco2
calcium binding and coiled-coil domain 2
MGI:1343177
Synonyms
2410154J16Rik, Ndp52, Ndp52l1
Feature Type
protein coding gene
Genetic Map
Chromosome 11
59.40 cM, cytoband C
Detailed Genetic Map ± 1 cM


Mapping data(4)
Sequence Map
Chr11:96099326-96111964 bp, - strand
From VEGA annotation of GRCm38

  12639 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HCOP human homology predictions: CALCOCO2
Gene Tree: Calcoco2
Human
homologs
CALCOCO2, calcium binding and coiled-coil domain 2
Orthology source: HGNC

IDs:
NCBI Gene ID: 10241
neXtProt AC: NX_Q13137

Human Synonyms: NDP52

Human Chr (Location): 17q21.32; chr17:48830988-48865245 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(66) : Gene trapped(62) Targeted(4)
Genomic Mutations involving Calcoco2 (2)
Incidental mutations (data from Mutagenetix , APF )
Interactions
Calcoco2 interacts with 86 markers (Mir9-1, Mir9-2, Mir9-3, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Component cytoplasm, cytoskeleton, ...
External Resources: FuncBase
Expression
Literature Summary: (1 records)
cDNA source data(14)
Other mouse links: GEO   Expression Atlas
Other vertebrate links: Xenbase calcoco2    NEW 
Molecular
reagents
All nucleic(23) Genomic(8) cDNA(14) Other(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000001956 (Evidence)
Ensembl Gene Model ENSMUSG00000006056 (Evidence)
Entrez Gene 76815 (Evidence)
DFCI TC1660457, TC1574990
DoTS DT.97393557, DT.110514127, DT.101223268, DT.110514124, DT.97401993, DT.110514117, DT.101377907
NIA Mouse Gene Index U033318
Consensus CDS Project CCDS59567.1
International Mouse Phenotyping Consortium Status Calcoco2
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000001956 VEGA Gene Model | MGI Sequence Detail 12639 C57BL/6J ±  kb
transcript OTTMUST00000003920 VEGA | MGI Sequence Detail 1621 Not Applicable 
polypeptide OTTMUSP00000001897 VEGA | MGI Sequence Detail 331 Not Applicable 

For the selected sequences
All sequences(46) RefSeq(6) UniProt(2)
Polymorphisms
SNPs within 2kb(73 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012852 Coiled-coil transcriptional coactivator-like
Protein Ontology PR:000004971 calcium-binding and coiled-coil domain-containing protein 2
References
(Earliest) J:51104 Mohlke KL, et al., Comparative mapping of distal murine chromosome 11 and human 17q21.3 in a region containing a modifying locus for murine plasma von Willebrand factor level. Genomics. 1998 Nov 15;54(1):19-30
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1924065, MGI:2144626

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
07/28/2015
MGI 5.22
The Jackson Laboratory