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Taf1 Gene Detail
Summary
  • Symbol
    Taf1
  • Name
    TATA-box binding protein associated factor 1
  • Synonyms
    B430306D02Rik, Ccg1, Ccg-1, KAT4, Taf2a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1336878
    NCBI Gene: 270627
  • Gene Overview
    MyGene.info: TAF1
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:101532734-101601789 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome X, 44.29 cM
  • Mapping Data
    16 experiments
Strain
Comparison
more
  • SNPs within 2kb
    119 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1336878
protein coding gene ChrX:101527572-101601789 (.)
129S1/SvImJ MGP_129S1SvImJ_G0035963
protein coding gene ChrX:98053561-98128160 (+)
A/J MGP_AJ_G0035948
protein coding gene ChrX:98046995-98117087 (+)
AKR/J MGP_AKRJ_G0035864
protein coding gene ChrX:100873548-100944351 (+)
BALB/cJ MGP_BALBcJ_G0035931
protein coding gene ChrX:96796819-96865609 (+)
C3H/HeJ MGP_C3HHeJ_G0035640
protein coding gene ChrX:98457130-98527525 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036460
protein coding gene ChrX:100964804-101039221 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033290
protein coding gene ChrX:95784123-95853286 (+)
CAST/EiJ MGP_CASTEiJ_G0034927
protein coding gene ChrX:82759234-82831498 (+)
CBA/J MGP_CBAJ_G0035615
protein coding gene ChrX:104094484-104170951 (+)
DBA/2J MGP_DBA2J_G0035769
protein coding gene ChrX:97263247-97332661 (+)
FVB/NJ MGP_FVBNJ_G0035707
protein coding gene ChrX:96639258-96710152 (+)
LP/J MGP_LPJ_G0035859
protein coding gene ChrX:99005447-99077024 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035742
protein coding gene ChrX:108630531-108708439 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036487
protein coding gene ChrX:97740826-97812402 (+)
PWK/PhJ MGP_PWKPhJ_G0034626
protein coding gene ChrX:80359504-80430770 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034454
protein coding gene ChrX:83668694-83742974 (+)
WSB/EiJ MGP_WSBEiJ_G0035066
protein coding gene ChrX:96446805-96519995 (+)



Homology
more
  • Human Ortholog
    TAF1, TATA-box binding protein associated factor 1
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TAF1, TATA-box binding protein associated factor 1
    Orthology source: HGNC, HomoloGene
  • Synonyms
    BA2R, CCG1, CCGS, DYT3, DYT3/TAF1, KAT4, MRXS33, NSCL2, N-TAF1, OF, P250, TAF2A, TAFII250, TAF(II)250, TAFII-250, XDP
  • Links
    NCBI Gene ID: 6872
    neXtProt AC: NX_P21675
    UniProt: P21675

  • Chr Location
    Xq13.1; chrX:71366220-71530525 (+)  GRCh38.p7

Human Diseases
more
  • Diseases
    1 with human TAF1 associations

Human Disease Mouse Models
      
IDs
Click on a disease name to see all genes associated with that disease.

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000031314 Ensembl Gene Model | MGI Sequence Detail 69056 C57BL/6J ±  kb
transcript ENSMUST00000101341 Ensembl | MGI Sequence Detail 8054 Not Applicable  
polypeptide ENSMUSP00000098895 Ensembl | MGI Sequence Detail 1902 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 126
    cDNA 125
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-1796, MGD-MRK-1797, MGI:2147953, MGI:88292
References
more
  • Summaries
    All 64
    Developmental Gene Expression 12
    Gene Ontology 13
    Phenotypes 2
  • Earliest
    J:12527 Derry JM, et al., Localization of the Ccg1 gene on the mouse X Chromosome. Cytogenet Cell Genet. 1989;51:988
  • Latest
    J:245730 Bardot P, et al., The TAF10-containing TFIID and SAGA transcriptional complexes are dispensable for early somitogenesis in the mouse embryo. Development. 2017 Oct 15;144(20):3808-3818

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/04/2018
MGI 6.13
The Jackson Laboratory