Kcnj16
Gene Detail

Symbol Name ID

Kcnj16 potassium inwardly-rectifying channel, subfamily J, member 16 MGI:1314842

Synonyms

6430410F18Rik, Kir5.1

Feature Type

protein coding gene

Genetic Map

Chromosome 11

75.01 cM
Detailed Genetic Map ± 1 cM


Mapping data(4)

Sequence Map

Chr11:110968033-111027968 bp, + strand From VEGA annotation of GRCm38   59936 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:23112  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Protein SuperFamily: G protein-activated inward rectifier potassium channel
Gene Tree: Kcnj16

Human homologs

Human Homolog		KCNJ16, potassium inwardly-rectifying channel, subfamily J, member 16
NCBI Gene ID		3773
neXtProt AC		NX_Q9NPI9
Human Synonyms		BIR9, KIR5.1
Human Chr (Location)		17q24.3; chr17:68071348-68131749 (+)  GRCh37.p13

Alleles and phenotypes

All alleles(5) : Targeted(5)
 

Mice homozygous for a knock-out allele exhibit abnormal neuron response to ammonium chloride withdrawal and carbon dioxide treatment.

 

Gene Ontology (GO) classifications

All GO classifications: (13 annotations)

Process	cellular potassium ion transport, ion transport, ...
Component	integral component of membrane, membrane, ...
Function	inward rectifier potassium channel activity, voltage-gated ion channel activity

External Resources: FuncBase

Expression

Literature Summary: (3 records)

Data Summary: Results (33)    Tissues (26)    Images (6)
Theiler Stages: 23, 25, 26, 28

Assay Type	Results
RNA in situ	30
RT-PCR	3

cDNA source data(51)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(52) cDNA(51) Primer pair(1)
Microarray probesets(4)

Other database links

VEGA Gene Model	OTTMUSG00000003322 (Evidence)
Ensembl Gene Model	ENSMUSG00000051497 (Evidence)
Entrez Gene	16517 (Evidence)
UniGene	30176
DFCI	TC1579766, TC1594791, TC1744343, TC1747377
DoTS	DT.101720052, DT.60100945, DT.87068305, DT.94205425, DT.97359927, DT.97404066
NIA Mouse Gene Index	U013506
Consensus CDS Project	CCDS25593.1
International Mouse Knockout Project Status	Kcnj16

Sequences

Length	Strain/Species
genomic	OTTMUSG00000003322	VEGA Gene Model | MGI Sequence Detail	59936	C57BL/6J
transcript	OTTMUST00000006977	VEGA | MGI Sequence Detail	3623	Not Applicable
polypeptide	OTTMUSP00000003312	VEGA | MGI Sequence Detail	419	Not Applicable

All sequences(66) RefSeq(10) UniProt(4)

Polymorphisms

RFLP(1) : SNPs within 2kb(660 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR014756	Immunoglobulin E-set
InterPro	IPR016449	Potassium channel, inwardly rectifying, Kir
InterPro	IPR008061	Potassium channel, inwardly rectifying, Kir5
InterPro	IPR013518	Potassium channel, inwardly rectifying, Kir, cytoplasmic
Protein Ontology	PR:000002055	inward rectifier potassium channel 16

References

(Earliest) J:51106 Mouri T, et al., Assignment of mouse inwardly rectifying potassium channel Kcnj16 to the distal region of mouse chromosome 11. Genomics. 1998 Nov 15;54(1):181-2
(Latest) J:188322 Trapp S, et al., Respiratory responses to hypercapnia and hypoxia in mice with genetic ablation of Kir5.1 (Kcnj16). Exp Physiol. 2011 Apr;96(4):451-9
All references(44)

Other accession IDs

MGI:2144072, MGI:2442290