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Tnfaip3 Gene Detail
Summary
  • Symbol
    Tnfaip3
  • Name
    tumor necrosis factor, alpha-induced protein 3
  • Synonyms
    A20, Tnfip3, zinc finger protein A20
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196377
    NCBI Gene: 21929
  • Gene Overview
    MyGene.info: TNFAIP3
  • Alliance
    gene page
  • Transcription Start Sites
    17 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:19000910-19015410 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 8.08 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    102 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1196377
 protein coding gene Chr10:19000910-19015657 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017043
 protein coding gene Chr10:16706595-16721218 (-)
A/J MGP_AJ_G0017021
 protein coding gene Chr10:16068724-16083462 (-)
AKR/J MGP_AKRJ_G0016985
 protein coding gene Chr10:16332098-16346841 (-)
BALB/cJ MGP_BALBcJ_G0016979
 protein coding gene Chr10:16131649-16146387 (-)
C3H/HeJ MGP_C3HHeJ_G0016804
 protein coding gene Chr10:16659048-16673787 (-)
C57BL/6NJ MGP_C57BL6NJ_G0017441
 protein coding gene Chr10:17118765-17134720 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015146
 protein coding gene Chr10:15095752-15110463 (-)
CAST/EiJ MGP_CASTEiJ_G0016386
 protein coding gene Chr10:16493885-16510337 (-)
CBA/J MGP_CBAJ_G0016776
 protein coding gene Chr10:17892788-17907530 (-)
DBA/2J MGP_DBA2J_G0016884
 protein coding gene Chr10:15956502-15971243 (-)
FVB/NJ MGP_FVBNJ_G0016879
 protein coding gene Chr10:15716160-15730912 (-)
LP/J MGP_LPJ_G0016959
 protein coding gene Chr10:16525048-16539791 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0016909
 protein coding gene Chr10:18174136-18188874 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0017479
 protein coding gene Chr10:16317197-16331815 (-)
PWK/PhJ MGP_PWKPhJ_G0016171
 protein coding gene Chr10:15802516-15817318 (-)
SPRET/EiJ MGP_SPRETEiJ_G0015954
 protein coding gene Chr10:16432569-16488063 (-)
WSB/EiJ MGP_WSBEiJ_G0016448
 protein coding gene Chr10:16418514-16434653 (-)



Homology
more
  • Human Ortholog
    TNFAIP3, TNF alpha induced protein 3
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TNFAIP3, TNF alpha induced protein 3
    Orthology source: HomoloGene, HGNC
  • Synonyms
    A20, AISBL, OTUD7C, TNFA1P2
  • Links
    NCBI Gene ID: 7128
    neXtProt AC: NX_P21580
    UniProt: P21580

  • Chr Location
    6q23.3; chr6:137866317-137883314 (+)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    85 phenotypes from 8 alleles in 9 genetic backgrounds
    8 phenotypes from multigenic genotypes
    2 images
    46 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Homozygous null mice display runting, severe multi-organ inflammation, hypersensitivity to lipopolysaccharide and TNF, and premature death. Older mice homozygous for point mutations that disrupt deubiquitinating activity develop splenomegaly and show an increased number of myeloid cells.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    103
  • GO References
    27
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    35
  • Tissues
    21
  • cDNA Data
    99
  • Literature Summary
    8
  • Comparison Matrix
    Gene Expression + Phenotype
    • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 21929 NCBI Gene Model | MGI Sequence Detail 14501 C57BL/6J ±  kb
    transcript NM_009397 RefSeq | MGI Sequence Detail 4437 C57BL/6  
    polypeptide Q60769 UniProt | EBI | MGI Sequence Detail 775 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 100
      cDNA 100

      Microarray probesets 4
    References
    more
    • Summaries
      All 124
      Developmental Gene Expression 8
      Gene Ontology 27
      Phenotypes 46
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:265518 Schneider C, et al., A Metabolite-Triggered Tuft Cell-ILC2 Circuit Drives Small Intestinal Remodeling. Cell. 2018 Jul 12;174(2):271-284.e14
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/06/2018
    MGI 6.13     		The Jackson Laboratory