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R3hcc1l Gene Detail
Summary
  • Symbol
    R3hcc1l
  • Name
    R3H domain and coiled-coil containing 1 like
  • Synonyms
    1700036B12Rik, D19Ertd386e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1196316
    NCBI Gene: 52013
Location & Maps
more
  • Sequence Map
    Chr19:42518759-42592343 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      73585 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    R3HCC1L, R3H domain and coiled-coil containing 1 like
  • Vertebrate Orthologs
    7
  • Human Ortholog
    R3HCC1L, R3H domain and coiled-coil containing 1 like
    Orthology source: HomoloGene
  • Synonyms
    C10orf28, GIDRP86, GIDRP88, PSORT
  • Links
    NCBI Gene ID: 27291
    neXtProt AC: NX_Q7Z5L2

  • Chr Location
    10q24.2; chr10:98134624-98244897 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    38
  • Gene trapped
    36
  • Targeted
    2
  • Incidental Mutations
    APF , CvDC
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035132 VEGA Gene Model | MGI Sequence Detail 73585 C57BL/6J ±  kb
transcript OTTMUST00000089429 VEGA | MGI Sequence Detail 4112 Not Applicable  
polypeptide OTTMUSP00000048874 VEGA | MGI Sequence Detail 775 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    485 from dbSNP Build 142
Protein
Information
less
  • UniProt
    3 Sequences
  • Protein Ontology
    PR:000007974 growth inhibition and differentiation-related protein 88
  • InterPro Domains
    IPR012677 Nucleotide-binding alpha-beta plait domain
Molecular
Reagents
less
  • All nucleic 12
    cDNA 11
    Primer pair 1

    Microarray probesets 5
Other
Accession IDs
less
MGI:1920569, MGI:2147546
References
more
  • Summaries
    All 35
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 9
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
04/19/2016
MGI 6.03
The Jackson Laboratory