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R3hcc1l
Gene Detail
 Symbol
Name
ID
R3hcc1l
R3H domain and coiled-coil containing 1 like
MGI:1196316
Synonyms 1700036B12Rik, D19Ertd386e
Feature Type protein coding gene
Genetic Map
Chromosome 19
36.47 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:42518759-42592343 bp, + strand
From VEGA annotation of GRCm38

  73585 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8707  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

Gene Tree: R3hcc1l

Human
homologs
Human Homolog R3HCC1L, R3H domain and coiled-coil containing 1-like
NCBI Gene ID 27291
neXtProt AC  NX_Q7Z5L2
Human Synonyms  C10orf28, GIDRP86, GIDRP88, PSORT
Human Chr (Location)  10q24.2; chr10:98134624-98244897 (+)  GRCh38
Mutations,
alleles, and
phenotypes
All mutations/alleles(37) : Gene trapped(36) Targeted(1)
Incidental mutations (data from APF )
Interactions
R3hcc1l interacts with 189 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (3 annotations)
Process biological_process
Component exon-exon junction complex
Function nucleotide binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (63)    Tissues (6)    Images (24)
Theiler Stages: 23
Assay TypeResults
RNA in situ 63
cDNA source data(11)
External Resources: Allen Institute   GEO   Expression Atlas
Molecular
reagents
All nucleic(12) cDNA(11) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene ModelOTTMUSG00000035132 (Evidence)
Ensembl Gene ModelENSMUSG00000025184 (Evidence)
Entrez Gene52013 (Evidence)
DFCITC1579589, TC1624493, TC1673906, TC1703221
DoTSDT.522960, DT.94243048, DT.94243049
NIA Mouse Gene IndexU019472, U039051
Consensus CDS ProjectCCDS29829.1
International Mouse Knockout Project StatusR3hcc1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035132 VEGA Gene Model | MGI Sequence Detail 73585 C57BL/6J ±  kb
transcript OTTMUST00000089429 VEGA | MGI Sequence Detail 4112 Not Applicable 
polypeptide OTTMUSP00000048874 VEGA | MGI Sequence Detail 775 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(4) UniProt(3)
Polymorphisms SNPs within 2kb(490 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding, alpha-beta plait
Protein Ontology PR:000007974 growth inhibition and differentiation-related protein 88
References (Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(36)
Other
accession IDs
MGI:1920569, MGI:2147546

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
09/09/2014
MGI 5.19
The Jackson Laboratory