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R3hcc1l
Gene Detail
Symbol

Name
ID
R3hcc1l
R3H domain and coiled-coil containing 1 like
MGI:1196316
Synonyms
1700036B12Rik, D19Ertd386e
Feature Type
protein coding gene
Genetic Map
Chromosome 19
36.47 cM
Detailed Genetic Map ± 1 cM


Mapping data(3)
Sequence Map
Chr19:42518759-42592343 bp, + strand
From VEGA annotation of GRCm38

  73585 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:8707  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog

HCOP human homology predictions: R3HCC1L
Gene Tree: R3hcc1l

Human
homologs
R3HCC1L, R3H domain and coiled-coil containing 1-like
Orthology source: HomoloGene

IDs:
NCBI Gene ID: 27291
neXtProt AC: NX_Q7Z5L2

Human Synonyms: C10orf28, GIDRP86, GIDRP88, PSORT

Human Chr (Location): 10q24.2; chr10:98134624-98244897 (+)  GRCh38.p2

Mutations,
alleles, and
phenotypes
All mutations/alleles(38) : Gene trapped(36) Targeted(2)
Incidental mutations (data from APF , CvDC )
Interactions
R3hcc1l interacts with 188 markers (Mir7-1, Mir7-2, Mir7b, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (4 annotations)
Process biological_process
Component exon-exon junction complex
Function nucleotide binding
External Resources: FuncBase
Expression
Literature Summary: (1 records)
Data Summary: Results (63)    Tissues (6)    Images (24)    Tissue x Stage Matrix (view)
Assay TypeResults
RNA in situ 63
cDNA source data(11)
Other mouse links: Allen Institute   GEO   Expression Atlas
Other vertebrate links: Xenbase LOC100494549 ; ZFIN r3hcc1l    NEW 
Molecular
reagents
All nucleic(12) cDNA(11) Primer pair(1)
Microarray probesets(5)
Other database
links
VEGA Gene Model OTTMUSG00000035132 (Evidence)
Ensembl Gene Model ENSMUSG00000025184 (Evidence)
Entrez Gene 52013 (Evidence)
DFCI TC1579589, TC1624493, TC1673906, TC1703221
DoTS DT.522960, DT.94243048, DT.94243049
NIA Mouse Gene Index U019472, U039051
Consensus CDS Project CCDS29829.1
International Mouse Phenotyping Consortium Status R3hcc1l
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000035132 VEGA Gene Model | MGI Sequence Detail 73585 C57BL/6J ±  kb
transcript OTTMUST00000089429 VEGA | MGI Sequence Detail 4112 Not Applicable 
polypeptide OTTMUSP00000048874 VEGA | MGI Sequence Detail 775 Not Applicable 

For the selected sequences
All sequences(50) RefSeq(4) UniProt(3)
Polymorphisms
SNPs within 2kb(490 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR012677 Nucleotide-binding alpha-beta plait domain
Protein Ontology PR:000007974 growth inhibition and differentiation-related protein 88
References
(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
All references(38)
Other
accession IDs
MGI:1920569, MGI:2147546

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
08/25/2015
MGI 6.0
The Jackson Laboratory