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Ifna-ps1 Pseudogene Detail
Summary
  • Symbol
    Ifna-ps1
  • Name
    interferon alpha gene, pseudogene 1
  • Synonyms
    Ifa-ps1, Mu IFN-alpha 41
Location &
Maps
more
  • Sequence Map
    Chr4:88497124-88498810 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 41.99 cM
Strain
Comparison
more
  • SNPs within 2kb
    9 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107669
 pseudogene Chr4:88497124-88498811 (-)
129S1/SvImJ MGP_129S1SvImJ_G0040354
 pseudogene Chr4:88449562-88451249 (-)
A/J MGP_AJ_G0040331
 pseudogene Chr4:85365443-85367131 (-)
AKR/J MGP_AKRJ_G0040260
 pseudogene Chr4:87473906-87475593 (-)
BALB/cJ MGP_BALBcJ_G0040332
 pseudogene Chr4:85574946-85576633 (-)
C3H/HeJ MGP_C3HHeJ_G0039957
 pseudogene Chr4:88193459-88195146 (-)
C57BL/6NJ MGP_C57BL6NJ_G0040936
 pseudogene Chr4:91829718-91840934 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0037335
 pseudogene Chr4:81366861-81368562 (-)
CAST/EiJ MGP_CASTEiJ_G0039033
 pseudogene Chr4:86035939-86037627 (-)
CBA/J MGP_CBAJ_G0039922
 pseudogene Chr4:94663306-94664993 (-)
DBA/2J MGP_DBA2J_G0040129
 pseudogene Chr4:85126207-85127894 (-)
FVB/NJ MGP_FVBNJ_G0040084
 pseudogene Chr4:84077193-84078880 (-)
LP/J MGP_LPJ_G0040175
 pseudogene Chr4:88806440-88808127 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0040079
 pseudogene Chr4:99656060-99657747 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0041026
 pseudogene Chr4:87611187-87612874 (-)
PWK/PhJ MGP_PWKPhJ_G0038724
 pseudogene Chr4:83446052-83447807 (-)
SPRET/EiJ MGP_SPRETEiJ_G0038426
 pseudogene Chr4:85122172-85124617 (-)
WSB/EiJ MGP_WSBEiJ_G0039272
 pseudogene Chr4:87814567-87816254 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
  • All Mutations and Alleles
    5
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    2
  • Radiation induced
    1
  • Genomic Mutations
    5 involving Ifna-ps1
  • Find Mice (IMSR)
    0 strains or lines available
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    23
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100416153 NCBI Gene Model | MGI Sequence Detail 1687 C57BL/6J ±  kb
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Genomic 2
Other
Accession IDs
less
MGD-MRK-18772, MGD-MRK-36244, MGI:3650007
References
more
  • Summaries
    All 12
    Phenotypes 4
  • Earliest
    J:20801 Le Roscouet D, et al., Structure of a murine alpha interferon pseudogene with a repetitive R-type sequence in the 3' flanking region. Mol Cell Biol. 1985 Jun;5(6):1343-8
  • Latest
    J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory