CROSS Mapping MGI Mouse MGI:43636

Mapping Data

Experiment

CROSS
Chromosome

5
Reference

J:19185 Grosson CL, et al., Synteny conservation of the Huntington's disease gene and surrounding loci on mouse Chromosome 5. Mamm Genome. 1994 Jul;5(7):424-8
ID

MGI:43636

Gene	Allele	Assay Type	Description
En2		Southern analysis	mp2
Il6		Southern analysis	ORMF2189
Ctbp1		Southern analysis	IT3D
Fgfr3		Southern analysis	385
Haus3		Southern analysis	HB1.4
D5H4S181E		Southern analysis	IT14B
Add1		Southern analysis	IT10C1
D5H4S95		Southern analysis	IT12B
Grk4		Southern analysis	IT11A
Htt		Southern analysis	IT15B
D5H4S62		Southern analysis	p8
Drd5		Southern analysis	D1B2
Qdpr		Southern analysis	DHPR.9
D5H4S80		Southern analysis	B5E
D5H4S76		Southern analysis	8MD4
D5Mnl25e		Southern analysis	pSC25
Kit		Southern analysis	pK3A
Alb		Southern analysis	Alb1 cDNA1
Idua		Southern analysis	pID89
Pde6b	Pde6b^rd1	Southern analysis	pBS-MPB81

Experiment

The authors followed the C57BL/6 allele in the cross.Offspring types indicate alleles inherited from F1 parent.
F1 direction known.

Type

Backcross, female
Female Parent

 /<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
Strain

(C57BL/6-A x CBA/CaGnLe-Kcnj6/+ x M. spretus)F1
Male Parent

 /
Strain

C57BL/6J
Allele 1

b from C57BL/6J
Allele 2

s from M. spretus

CROSS Data

MC #mice	En2	Il6	Ctbp1	Fgfr3	Haus3	D5H4S181E	Add1	D5H4S95	Grk4	Htt	D5H4S62	Drd5	Qdpr	D5H4S80	D5H4S76	D5Mnl25e	Kit	Alb	Idua	Pde6b
45	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
49	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s
4	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s
6	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s
12	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
En2	Il6	4	149	2.685	1.324
Il6	Ctbp1	5	149	3.356	1.475
Ctbp1	Fgfr3	1	149	0.671	0.669
Fgfr3	Haus3	0	149	0.000	0.000
Haus3	D5H4S181E	0	149	0.000	0.000
D5H4S181E	Add1	0	149	0.000	0.000
Add1	D5H4S95	0	149	0.000	0.000
D5H4S95	Grk4	0	149	0.000	0.000
Grk4	Htt	0	149	0.000	0.000
Htt	D5H4S62	4	149	2.685	1.324
D5H4S62	Drd5	0	149	0.000	0.000
Drd5	Qdpr	5	149	3.356	1.475
Qdpr	D5H4S80	3	149	2.013	1.151
D5H4S80	D5H4S76	4	149	2.685	1.324
D5H4S76	D5Mnl25e	7	149	4.698	1.733
D5Mnl25e	Kit	0	149	0.000	0.000
Kit	Alb	6	149	4.027	1.611
Alb	Idua	16	149	10.738	2.536
Idua	Pde6b	0	149	0.000	0.000

MC #mice	En2	Il6	Ctbp1	Fgfr3	Haus3	D5H4S181E	Add1	D5H4S95	Grk4	Htt	D5H4S62	Drd5	Qdpr	D5H4S80	D5H4S76	D5Mnl25e	Kit	Alb	Idua	Pde6b
45	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
49	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s
4	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s
6	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s
12	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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MC #mice	En2	Il6	Ctbp1	Fgfr3	Haus3	D5H4S181E	Add1	D5H4S95	Grk4	Htt	D5H4S62	Drd5	Qdpr	D5H4S80	D5H4S76	D5Mnl25e	Kit	Alb	Idua	Pde6b
45	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
49	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s
4	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s
6	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s
12	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b

MC #mice	En2	Il6	Ctbp1	Fgfr3	Haus3	D5H4S181E	Add1	D5H4S95	Grk4	Htt	D5H4S62	Drd5	Qdpr	D5H4S80	D5H4S76	D5Mnl25e	Kit	Alb	Idua	Pde6b
45	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
49	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
4	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
3	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s	s
4	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s	s
6	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s
12	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b