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Mapping Data
Experiment
  • Experiment
    CROSS
  • Chromosome
    7
  • Reference
    J:18520 Watanabe H, et al., Mouse cartilage matrix deficiency (cmd) caused by a 7 bp deletion in the aggrecan gene. Nat Genet. 1994 Jun;7(2):154-7
  • ID
    MGI:43625
Genes
GeneAlleleAssay TypeDescription
Gpi1 reported elsewhere
Tph1 reported elsewhere
Fes reported elsewhere
Acan Southern analysis Agc cDNA1
Tyr reported elsewhere
Zp2 reported elsewhere
Notes
  • Reference
    cmd (cartilage matrix deficiency) is a mutation at the Agc locus caused by a 7bp deletion in exon 5 of Agc. Authors report Gabra4 mapping to Chromosome 7, subsequent data report this locus mapping to Chromosome 5, see J:62530 (Tarantino LM, Genomics 2000;66:55-64)
  • Experiment
    Offspring types indicate alleles inherited from F1 parent.
CROSS
  • Type
    Backcross, female
  • Female Parent
    <n> <n> <n> <n> <n> <n>/<m> <m> <m> <m> <m> <m>
  • Strain
    (NFS/N or C58/J x M. m. musculus)F1
  • Male Parent
    <m> <m> <m> <m> <m> <m>/<m> <m> <m> <m> <m> <m>
  • Strain
    M. m. musculus
  • Mapping Panel
  • Allele 1
    n from NFS/N or C58/J
  • Allele 2
    s from M. m. musculus
2x2 Data Reported
Marker 1 Marker 2 # Recombinants # Parentals
Gpi1 Tph1 5 53
Tph1 Fes 6 51
Tph1 Acan 6 51
Fes Acan 0 54
Fes Tyr 8 140
Acan Tyr 8 140
Tyr Zp2 24 108
Statistics
Marker 1 Marker 2 # Recombinants Total % Recombinants Std Error
Fes Tyr 8 148 5.405 1.859
Fes Acan 0 54 0.000 0.000
Gpi1 Tph1 5 58 8.621 3.685
Tph1 Fes 6 57 10.526 4.065
Tph1 Acan 6 57 10.526 4.065
Tyr Zp2 24 132 18.182 3.357
Acan Tyr 8 148 5.405 1.859

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
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last database update
12/03/2019
MGI 6.14
The Jackson Laboratory