Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  7
• Reference
  J:18520 Watanabe H, et al., Mouse cartilage matrix deficiency (cmd) caused by a 7 bp deletion in the aggrecan gene. Nat Genet. 1994 Jun;7(2):154-7
• ID
  MGI:43625

Genes

Gene	Assay Type	Description
Gpi1	reported elsewhere
Tph1	reported elsewhere
Fes	reported elsewhere
Acan	Southern analysis	Agc cDNA1
Tyr	reported elsewhere
Zp2	reported elsewhere

Notes

• Reference
  cmd (cartilage matrix deficiency) is a mutation at the Agc locus caused by a 7bp deletion in exon 5 of Agc. Authors report Gabra4 mapping to Chromosome 7, subsequent data report this locus mapping to Chromosome 5, see J:62530 (Tarantino LM, Genomics 2000;66:55-64)
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <n> <n> <n> <n> <n> <n>/<m> <m> <m> <m> <m> <m>
• Strain
  (NFS/N or C58/J x M. m. musculus)F1
• Male Parent
  <m> <m> <m> <m> <m> <m>/<m> <m> <m> <m> <m> <m>
• Strain
  M. m. musculus
• Mapping Panel
  Kozak Skive
• Allele 1
  n from NFS/N or C58/J
• Allele 2
  s from M. m. musculus

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
Gpi1	Tph1	5	53
Tph1	Fes	6	51
Tph1	Acan	6	51
Fes	Acan	0	54
Fes	Tyr	8	140
Acan	Tyr	8	140
Tyr	Zp2	24	108

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Fes	Tyr	8	148	5.405	1.859
Fes	Acan	0	54	0.000	0.000
Gpi1	Tph1	5	58	8.621	3.685
Tph1	Fes	6	57	10.526	4.065
Tph1	Acan	6	57	10.526	4.065
Tyr	Zp2	24	132	18.182	3.357
Acan	Tyr	8	148	5.405	1.859