Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  1
• Reference
  J:12786 Malo D, et al., High-resolution linkage map in the vicinity of the host resistance locus Bcg. Genomics. 1993 Jun;16(3):655-63
• ID
  MGI:43535

Genes

Gene	Allele	Assay Type
Fn1		reported elsewhere
D1Mcg2		PCR amplified length variant
D1Mcg3		PCR amplified length variant
Vil1		visible phenotype
Slc11a1	Slc11a1^s	reported elsewhere
D1Mit7		PCR amplified length variant
D1Mcg8		PCR amplified length variant

Notes

• Reference
  Authors use Lsh for Nramp1, Lsh is an allele of Nramp1.

RI

• Origin
  A/J x C57BL/6J
• Designation
  AXB
• Abbreviation 1
  A
• Abbreviation 2
  B

RI Data (columns show RI Lines sampled)

Marker	1	2	4	5	6	7	9	10	13	14	15	17	18	19	20	21	23	24
Fn1	B	A	A	A	B	A	A	A	B	B	B	A	B	B	B	A	A	A
D1Mcg2	B	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B	B	A
Vil1	B	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B	B	A
Slc11a1	B	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B	B	A
D1Mit7	B	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B	B	A
D1Mcg8	B	A	A	A	B	A	A	A	A	A	B	A	B	B	B	B	B	A

2x2 Data

Marker 1	Marker 2	Discordant	Strains	RI Sets
D1Mcg3	Vil1	0	24	AXB
Vil1	Slc11a1	0	24	AXB

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Fn1	D1Mcg2	4	18	8.333	5.512
D1Mcg2	Vil1	0	18	0.000	0.000
Vil1	Slc11a1	0	18	0.000	0.000
Slc11a1	D1Mit7	0	18	0.000	0.000
D1Mit7	D1Mcg8	0	18	0.000	0.000