Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  6
• Reference
  J:47939 McKee-Johnson JW, et al., Physical and genetic maps of the deafwaddler region on distal mouse Chr 6. Genomics. 1998 May 1;49(3):371-7
• ID
  MGI:1270119

Genes

Gene	Assay Type	Description
D6Mit64	PCR amplified length variant
Cntn3	PCR amplified length variant	Pang-pA, Pang-pB
Itpr1	PCR amplified length variant	Itpr1-pA, Itpr1-pB
D6Mit108	PCR amplified length variant
D6Mit23	PCR amplified length variant
D6Mit107	PCR amplified length variant
D6Mit328	PCR amplified length variant
D6Mit11	PCR amplified length variant
Atp2b2	visible phenotype
D6Mit55	PCR amplified length variant
Slc6a11	Southern analysis	GAT-B
D6Mit63	PCR amplified length variant
Syn2	PCR amplified length variant	Syn2-pA, Syn2-pB
D6Mit44	PCR amplified length variant

CROSS

• Type
  Backcross, male
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C3HeB/FeJ-Atp2b2
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (CAST/Ei x C3HeB/FeJ-Atp2b2)F1
• Allele 1
  b from C3HeB/FeJ-Atp2b2
• Allele 2
  c from CAST/EiJ

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D6Mit64	Cntn3	1	476
Cntn3	Itpr1	2	475
Itpr1	D6Mit108	2	475
Itpr1	D6Mit23	2	475
Itpr1	D6Mit107	2	475
Itpr1	D6Mit328	2	475
D6Mit108	D6Mit11	3	474
D6Mit23	D6Mit11	3	474
D6Mit107	D6Mit11	3	474
D6Mit328	D6Mit11	3	474
D6Mit11	Atp2b2	1	476
Atp2b2	Slc6a11	5	472
Atp2b2	D6Mit55	5	472
Atp2b2	D6Mit63	5	472
Slc6a11	Syn2	1	476
D6Mit55	Syn2	1	476
D6Mit63	Syn2	1	476
Syn2	D6Mit44	6	471

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D6Mit64	Cntn3	1	477	0.210	0.209
Cntn3	Itpr1	2	477	0.419	0.296
Itpr1	D6Mit108	2	477	0.419	0.296
Itpr1	D6Mit23	2	477	0.419	0.296
Itpr1	D6Mit107	2	477	0.419	0.296
Itpr1	D6Mit328	2	477	0.419	0.296
D6Mit108	D6Mit11	3	477	0.629	0.362
D6Mit23	D6Mit11	3	477	0.629	0.362
D6Mit107	D6Mit11	3	477	0.629	0.362
D6Mit328	D6Mit11	3	477	0.629	0.362
D6Mit11	Atp2b2	1	477	0.210	0.209
Atp2b2	Slc6a11	5	477	1.048	0.466
Atp2b2	D6Mit55	5	477	1.048	0.466
Atp2b2	D6Mit63	5	477	1.048	0.466
Slc6a11	Syn2	1	477	0.210	0.209
D6Mit55	Syn2	1	477	0.210	0.209
D6Mit63	Syn2	1	477	0.210	0.209
Syn2	D6Mit44	6	477	1.258	0.510