Mouse Genome Informatics Deltagen Knockout Mice
Phenotypic Data Download Package Summary 		 
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Each zipped package contains data and image files for one line of knock-out mice.  The data and format of most of the files were provided by Deltagen, Inc. MGI has not verified the content or altered the format of the material except in specific cases described below.

The name of the zip file is the MGI Accession ID of a gene whose data are within. After you open the zip file, the name of the main folder is the MGI Accession ID number of the gene and the gene symbol current at the time we created the package.  For example, MGI1891209.zip opens a main folder named MGI1891209_Efemp2.
Main folder
When opened, the main folder contains the following files and folders:
File or Folder Name Description
Tnnn_Summaries.doc Deltagen's summary of test results in Microsoft Word format.
Tnnn_Molecular_Biology.doc Deltagen's summary of genotyping results in Microsoft Word format.
Genotyping_Overview.doc Deltagen's description of their genotyping methods in Microsoft Word format.
Image_ID_Instructions.doc Instructions for finding individual image JPG files in their folder structure; in Microsoft Word format .
Note: all images are linked from Excel spreadsheets in the Images folder. 
You do not need these instructions to view an image.
Tnnn_Keyword_Annotations.xls Phenotypic keywords for the knock-out line in Microsoft Excel spreadsheet format.
AboutTheDownload.html This file.
WhichAlleleIsThis.html
WhichAlleleIsThis.txt		 Contains the Deltagen T-number and corresponding symbols, names, and MGI accession ID numbers for the gene and allele.
HTML format contains links to MGI web pages; TXT format is text-only.
All knock-out lines' identification data appear in the table below.
Images folder Folder containing files related to data and images; see below.
Datasets folder Folder containing files related only to data; see below.

 
Images folder
The Images folder contains up to four Excel files of phenotypic data. Each file contains image file identifiers linked to image files. Open the Excel spreadsheet whose name matches the data you desire, and click on the links to view images associated with the data.
("Tnnn" is the Deltagen T-number of the knock-out line.)
File or Folder Name Description Notes
Tnnn_Densitometer_images.xls Data with links to images  
Tnnn_LacZ_images.xls Data with links to images  
Tnnn_EmbryonicDevelopment_images.xls Data with links to images  
Tnnn_Histopathology_images.xls Data with links to images  
Densitometer Folder containing the image files You do not need to open any additional folders to view the images.   Instructions for locating an individual image JPG file are contained in Image_ID_instructions.doc if you want to understand the folder structure where the image files are stored.
Lacz Folder containing the image files
Embryonic_development Folder containing the image files
Histopathology_images Folder containing the image files

You may encounter the following abbreviations in the data:
  • N/A - Not applicable
  • NOS - Not otherwise specified
  • NSA - Negative symptom assessment
Datasets folder
The Datasets folder contains additional sets of phenotypic and expression data.  These Excel spreadsheets may list image file identifiers but do not contain links to the images, and may repeat data found in the file of the same name in the Images folder.  One or more of the following may be included in this zipped data package:
("Tnnn" is the Deltagen T-number of the knock-out line.)
File Name Description
Tnnn_Densitometer.xls Data and image identifier numbers (not linked)
Tnnn_Embryonic_Development.xls Data and image identifier numbers (not linked)
Tnnn_Expression_Analysis.xls Data
Tnnn_Hematology.xls Data
Tnnn_Histopathology.xls Data and image identifier numbers (not linked)
Tnnn_Mouse_Metrics.xls Data
Tnnn_Necropsy.xls Data
Tnnn_Overall_Behavior.xls Data
Tnnn_Physical_Exam.xls Data
Tnnn_RT-PCR.xls Includes unlinked JPG image identifier
Tnnn_RT-PCR_Conditions.xls Data
Tnnn_RT-PCR.jpg Image associated with the Tnnn_RT-PCR.xls file
Tnnn_Serum_Chemistry.xls Data
Tnnn_TaqMan_-_Expression.xls Data

 

The table below lists all Deltagen alleles with their corresponding Deltagen ID numbers and MGI allele and gene identity information.

Marker Marker Name Marker ID Allele Allele ID Deltagen_ID
Acvrl1 activin A receptor, type II-like 1 MGI:1338946 Acvrl1tm1Dgen MGI:3604490 T1443
Adamts4 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 4 MGI:1339949 Adamts4tm1Dgen MGI:3604481 T1231
Adamts5 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) MGI:1346321 Adamts5tm1Dgen MGI:3604488 T1232
Adcy3 adenylate cyclase 3 MGI:99675 Adcy3tm1Dgen MGI:3604495 T1520
Adcy4 adenylate cyclase 4 MGI:99674 Adcy4tm1Dgen MGI:3604519 T1521
Adcy7 adenylate cyclase 7 MGI:102891 Adcy7tm1Dgen MGI:3604498 T1519
Adipor1 adiponectin receptor 1 MGI:1919924 Adipor1tm1Dgen MGI:3604517 T345
Adipor2 adiponectin receptor 2 MGI:93830 Adipor2tm1Dgen MGI:3604502 T1962
Arts1 type 1 tumor necrosis factor receptor shedding aminopeptidase regulator MGI:1933403 Arts1tm1Dgen MGI:3604456 T108
Avpr1a arginine vasopressin receptor 1A MGI:1859216 Avpr1atm1Dgen MGI:3604506 T672
Avpr1b arginine vasopressin receptor 1B MGI:1347010 Avpr1btm1Dgen MGI:3604516 T824
Axl AXL receptor tyrosine kinase MGI:1347244 Axltm1Dgen MGI:3604510 T1453
B3galnt1 UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 1 MGI:1349405 B3galnt1tm1Dgen MGI:3604458 T28
B3galt2 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 MGI:1349461 B3galt2tm1Dgen MGI:3604457 T31
B3galt5 UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 5 MGI:2136878 B3galt5tm1Dgen MGI:3604460 T2208
B3gnt2 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 MGI:1889505 B3gnt2tm1Dgen MGI:3604461 T21
B3gnt3 UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3 MGI:2152535 B3gnt3tm1Dgen MGI:3604463 T25
Bai2 brain-specific angiogenesis inhibitor 2 MGI:2451244 Bai2tm1Dgen MGI:3604512 T1055
Bdkrb1 bradykinin receptor, beta 1 MGI:88144 Bdkrb1tm1Dgen MGI:3604513 T609
Birc1a baculoviral IAP repeat-containing 1a MGI:1298223 Birc1atm1Dgen MGI:3604514 T693
Cacna1c calcium channel, voltage-dependent, L type, alpha 1C subunit MGI:103013 Cacna1ctm1Dgen MGI:3604527 T1122
Cacna2d3 calcium channel, voltage-dependent, alpha2/delta subunit 3 MGI:1338890 Cacna2d3tm1Dgen MGI:3604520 T12
Cacng3 calcium channel, voltage-dependent, gamma subunit 3 MGI:1859165 Cacng3tm1Dgen MGI:3604524 T1128
Cacng4 calcium channel, voltage-dependent, gamma subunit 4 MGI:1859167 Cacng4tm1Dgen MGI:3604526 T1127
Calcr calcitonin receptor MGI:101950 Calcrtm1Dgen MGI:3604511 T612
Capn5 calpain 5 MGI:1100859 Capn5tm1Dgen MGI:3604529 T705
Capn7 calpain 7 MGI:1338030 Capn7tm1Dgen MGI:3604530 T565
Casp12 caspase 12 MGI:1312922 Casp12tm1Dgen MGI:3604507 T713
Cck cholecystokinin MGI:88297 Ccktm1Dgen MGI:3604503 T722
Ccr1l1 chemokine (C-C motif) receptor 1-like 1 MGI:104617 Ccr1l1tm1Dgen MGI:3604539 T3745
Ccr6 chemokine (C-C motif) receptor 6 MGI:1333797 Ccr6tm1Dgen MGI:3604541 T187
Ccr7 chemokine (C-C motif) receptor 7 MGI:103011 Ccr7tm1Dgen MGI:3604543 T611
Ccrl1 chemokine (C-C motif) receptor-like 1 MGI:2181676 Ccrl1tm1Dgen MGI:3604505 T1115
Ccrl2 chemokine (C-C motif) receptor-like 2 MGI:1920904 Ccrl2tm1Dgen MGI:3604544 T339
Cd97 CD97 antigen MGI:1347095 Cd97tm1Dgen MGI:3604535 T867
Celsr2 cadherin EGF LAG seven-pass G-type receptor 2 MGI:1858235 Celsr2tm1Dgen MGI:3604518 T960
Cer1 cerberus 1 homolog (Xenopus laevis) MGI:1201414 Cer1tm1Dgen MGI:3604536 T67
Chrna2 cholinergic receptor, nicotinic, alpha polypeptide 2 (neuronal) MGI:87886 Chrna2tm1Dgen MGI:3604548 T1658
Chst3 carbohydrate (chondroitin 6/keratan) sulfotransferase 3 MGI:1858224 Chst3tm1Dgen MGI:3604509 T1585
Clca5 chloride channel calcium activated 5 MGI:2139758 Clca5tm1Dgen MGI:3604504 T401
Cnr2 cannabinoid receptor 2 (macrophage) MGI:104650 Cnr2tm1Dgen MGI:3604531 T614
Ctsc cathepsin C MGI:109553 Ctsctm1Dgen MGI:3604533 T717
Cxcr3 chemokine (C-X-C motif) receptor 3 MGI:1277207 Cxcr3tm1Dgen MGI:3604545 T1043
Drd5 dopamine receptor 5 MGI:94927 Drd5tm1Dgen MGI:3604549 T679
Edg6 endothelial differentiation, G-protein-coupled receptor 6 MGI:1333809 Edg6tm1Dgen MGI:3604550 T302
Efemp2 epidermal growth factor-containing fibulin-like extracellular matrix protein 2 MGI:1891209 Efemp2tm1Dgen MGI:3604551 T194
Esrra estrogen related receptor, alpha MGI:1346831 Esrratm1Dgen MGI:3604552 T1888
Esrrg estrogen-related receptor gamma MGI:1347056 Esrrgtm1Dgen MGI:3604501 T131
Faim2 Fas apoptotic inhibitory molecule 2 MGI:1919643 Faim2tm1Dgen MGI:3604553 T1018
Frzb frizzled-related protein MGI:892032 Frzbtm1Dgen MGI:3604496 T1471
Fzd1 frizzled homolog 1 (Drosophila) MGI:1196625 Fzd1tm1Dgen MGI:3604554 T670
Fzd10 frizzled homolog 10 (Drosophila) MGI:2136761 Fzd10tm1Dgen MGI:3604499 T1468
Fzd6 frizzled homolog 6 (Drosophila) MGI:108474 Fzd6tm1Dgen MGI:3604497 T669
Fzd8 frizzled homolog 8 (Drosophila) MGI:108460 Fzd8tm1Dgen MGI:3604555 T671
Gabbr1 gamma-aminobutyric acid (GABA-B) receptor, 1 MGI:1860139 Gabbr1tm1Dgen MGI:3604487 T1042
Gabra3 gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 3 MGI:95615 Gabra3tm1Dgen MGI:3604586 T936
Gabra4 gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 4 MGI:95616 Gabra4tm1Dgen MGI:3604588 T899
Gabrp gamma-aminobutyric acid (GABA-A) receptor, pi MGI:2387597 Gabrptm1Dgen MGI:3604585 T1632
Gabrq gamma-aminobutyric acid (GABA-A) receptor, subunit theta MGI:1888498 Gabrqtm1Dgen MGI:3604492 T1631
Galr1 galanin receptor 1 MGI:1096364 Galr1tm1Dgen MGI:3604584 T647
Glra3 glycine receptor, alpha 3 subunit MGI:95749 Glra3tm1Dgen MGI:3604595 T1635
Gpr151 G protein-coupled receptor 151 MGI:2441887 Gpr151tm1Dgen MGI:3604578 T3348
Gpr19 G protein-coupled receptor 19 MGI:892973 Gpr19tm1Dgen MGI:3604494 T174
Gpr3 G-protein coupled receptor 3 MGI:101908 Gpr3tm1Dgen MGI:3604483 T342
Gpr37 G protein-coupled receptor 37 MGI:1313297 Gpr37tm1Dgen MGI:3604579 T334
Gpr6 G protein-coupled receptor 6 MGI:2155249 Gpr6tm1Dgen MGI:3604582 T356
Gprk5 G protein-coupled receptor kinase 5 MGI:109161 Gprk5tm1Dgen MGI:3604583 T1767
Gria3 glutamate receptor, ionotropic, AMPA3 (alpha 3) MGI:95810 Gria3tm1Dgen MGI:3604486 T1623
Gria4 glutamate receptor, ionotropic, AMPA4 (alpha 4) MGI:95811 Gria4tm1Dgen MGI:3604485 T1624
Grik5 glutamate receptor, ionotropic, kainate 5 (gamma 2) MGI:95818 Grik5tm1Dgen MGI:3604589 T898
Grm1 glutamate receptor, metabotropic 1 MGI:1351338 Grm1tm1Dgen MGI:3604591 T801
Grm3 glutamate receptor, metabotropic 3 MGI:1351340 Grm3tm1Dgen MGI:3604593 T796
Grm7 glutamate receptor, metabotropic 7 MGI:1351344 Grm7tm1Dgen MGI:3604484 T799
Gsk3b glycogen synthase kinase 3 beta MGI:1861437 Gsk3btm1Dgen MGI:3604596 T3228
Hcrtr1 hypocretin (orexin) receptor 1 MGI:2385650 Hcrtr1tm1Dgen MGI:3604598 T2093
Htr1f 5-hydroxytryptamine (serotonin) receptor 1F MGI:99842 Htr1ftm1Dgen MGI:3604523 T597
Htr2b 5-hydroxytryptamine (serotonin) receptor 2B MGI:109323 Htr2btm1Dgen MGI:3604521 T599
Htr4 5 hydroxytryptamine (serotonin) receptor 4 MGI:109246 Htr4tm1Dgen MGI:3604474 T600
Htr5a 5-hydroxytryptamine (serotonin) receptor 5A MGI:96283 Htr5atm1Dgen MGI:3604475 T619
Htr7 5-hydroxytryptamine (serotonin) receptor 7 MGI:99841 Htr7tm1Dgen MGI:3604477 T602
Il8ra interleukin 8 receptor, alpha MGI:2448715 Il8ratm1Dgen MGI:3604601 T807
Insl5 insulin-like 5 MGI:1346085 Insl5tm1Dgen MGI:3604599 T65
Kcnh5 potassium voltage-gated channel, subfamily H (eag-related), member 5 MGI:3584508 Kcnh5tm1Dgen MGI:3604469 T1654
Kcnq2 potassium voltage-gated channel, subfamily Q, member 2 MGI:1309503 Kcnq2tm1Dgen MGI:3604594 T1112
Lats2 large tumor suppressor 2 MGI:1354386 Lats2tm1Dgen MGI:3604602 T527
Lmbr1 limb region 1 MGI:1861746 Lmbr1tm1Dgen MGI:3604603 T3777
Lmbr1l limb region 1 like MGI:1289247 Lmbr1ltm1Dgen MGI:3604480 T2820
Lrp5 low density lipoprotein receptor-related protein 5 MGI:1278315 Lrp5tm1Dgen MGI:3604604 T193
Mapkapk2 MAP kinase-activated protein kinase 2 MGI:109298 Mapkapk2tm1Dgen MGI:3604570 T3255
Mmp16 matrix metallopeptidase 16 MGI:1276107 Mmp16tm1Dgen MGI:3604479 T1241
Mmp17 matrix metallopeptidase 17 MGI:1346076 Mmp17tm1Dgen MGI:3604575 T1242
Mtmr1 myotubularin related protein 1 MGI:1858271 Mtmr1tm1Dgen MGI:3604577 T1973
Mtmr2 myotubularin related protein 2 MGI:1924366 Mtmr2tm1Dgen MGI:3604478 T1970
Ntsr1 neurotensin receptor 1 MGI:97386 Ntsr1tm1Dgen MGI:3604581 T641
Oprd1 opioid receptor, delta 1 MGI:97438 Oprd1tm1Dgen MGI:3604473 T678
Oprl1 opioid receptor-like 1 MGI:97440 Oprl1tm1Dgen MGI:3604471 T651
Pde1b phosphodiesterase 1B, Ca2+-calmodulin dependent MGI:97523 Pde1btm1Dgen MGI:3604470 T1166
Pkd2l2 polycystic kidney disease 2-like 2 MGI:1858231 Pkd2l2tm1Dgen MGI:3604592 T325
Ppard peroxisome proliferator activator receptor delta MGI:101884 Ppardtm1Dgen MGI:3604590 T683
Ppm1f protein phosphatase 1F (PP2C domain containing) MGI:1918464 Ppm1ftm1Dgen MGI:3604597 T2107
Ppm1g protein phosphatase 1G (formerly 2C), magnesium-dependent, gamma isoform MGI:106065 Ppm1gtm1Dgen MGI:3604466 T753
Prss12 protease, serine, 12 neurotrypsin (motopsin) MGI:1100881 Prss12tm1Dgen MGI:3604467 T1715
Ptch2 patched homolog 2 MGI:1095405 Ptch2tm1Dgen MGI:3604587 T1673
Ptger1 prostaglandin E receptor 1 (subtype EP1) MGI:97793 Ptger1tm1Dgen MGI:3604468 T593
Ptpro protein tyrosine phosphatase, receptor type, O MGI:1097152 Ptprotm1Dgen MGI:3604600 T731
Rgs2 regulator of G-protein signaling 2 MGI:1098271 Rgs2tm1Dgen MGI:3604465 T460
Rgs4 regulator of G-protein signaling 4 MGI:108409 Rgs4tm1Dgen MGI:3604580 T462
Rgs5 regulator of G-protein signaling 5 MGI:1098434 Rgs5tm1Dgen MGI:3604464 T459
Scn11a sodium channel, voltage-gated, type XI, alpha MGI:1345149 Scn11atm1Dgen MGI:3604572 T1119
Scn9a sodium channel, voltage-gated, type IX, alpha MGI:107636 Scn9atm1Dgen MGI:3604573 T1217
Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A MGI:107556 Sema5atm1Dgen MGI:3604576 T2007
Sema6c sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C MGI:1338032 Sema6ctm1Dgen MGI:3604574 T2165
Slc22a12 solute carrier family 22 (organic anion/cation transporter), member 12 MGI:1195269 Slc22a12tm1Dgen MGI:3604569 T1486
Slc22a6 solute carrier family 22 (organic anion transporter), member 6 MGI:892001 Slc22a6tm1Dgen MGI:3604571 T1494
Slc40a1 solute carrier family 40 (iron-regulated transporter), member 1 MGI:1315204 Slc40a1tm1Dgen MGI:3604568 T1841
Slc6a11 solute carrier family 6 (neurotransmitter transporter, GABA), member 11 MGI:95630 Slc6a11tm1Dgen MGI:3604491 T1380
Slc6a9 solute carrier family 6 (neurotransmitter transporter, glycine), member 9 MGI:95760 Slc6a9tm1Dgen MGI:3604567 T1381
Slc7a8 solute carrier family 7 (cationic amino acid transporter, y+ system), member 8 MGI:1355323 Slc7a8tm1Dgen MGI:3604565 T1783
Slc9a6 solute carrier family 9 (sodium/hydrogen exchanger), isoform 6 MGI:2443511 Slc9a6tm1Dgen MGI:3604561 T1688
Sstr1 somatostatin receptor 1 MGI:98327 Sstr1tm1Dgen MGI:3604559 T623
Tgfbr1 transforming growth factor, beta receptor I MGI:98728 Tgfbr1tm1Dgen MGI:3604556 T1444
Thbs4 thrombospondin 4 MGI:1101779 Thbs4tm1Dgen MGI:3604558 T2006
Tlr2 toll-like receptor 2 MGI:1346060 Tlr2tm1Dgen MGI:3604557 T315
Tmprss11a transmembrane protease, serine 11a MGI:2684853 Tmprss11atm1Dgen MGI:3604454 T54
Tpp1 tripeptidyl peptidase I MGI:1336194 Tpp1tm1Dgen MGI:3604537 T1406
Trpm5 transient receptor potential cation channel, subfamily M, member 5 MGI:1861718 Trpm5tm1Dgen MGI:3604455 T1178
Twsg1 twisted gastrulation homolog 1 (Drosophila) MGI:2137520 Twsg1tm1Dgen MGI:3604453 T268
Uchl1 ubiquitin carboxy-terminal hydrolase L1 MGI:103149 Uchl1tm1Dgen MGI:3604452 T1320
Xcr1 chemokine (C motif) receptor 1 MGI:1346338 Xcr1tm1Dgen MGI:3604538 T355