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SNP Detail
ID/Version
rs27319024 dbSNP (from dbSNP Build 137) Created in dbSNP build: 125
Last updated in dbSNP build: 137
Additional
resources
MPD | Mouse Genome Browser | Ensembl SNPView | UCSC Browser | NCBI MapViewer
Variation Type: SNP
Alleles: A/G
Genome
location
and
flanking
sequence
Location: Chr2:161769660 (GRCm38)
SNP orientation to the genome: forward

SNP reference flanking sequence:

                      ATCCTGCGAT GGTTTGGATC AAGATTAGTC CAGGGCTGGC
GTCATGGACT GCCCATAATT GCCCCAAGAG TATAGCTGTG ATGAACTAAG AAAACAGGTC
R
GTTGCTGAGT TTTGGATATT CCATTGATCA AGGCTGTTGG AAGAAAGTAC AGCCAACTAC
ACAGGCTTAG CCTCGTCATC CCTCATCTGG CTGTTAGGTT 

R= A/G
Note: Sequence in lower case indicates low-complexity or repetitive sequence
BLAST SNP flanking sequence against the mouse Genome
 
SNP assays
and
SNP consensus
Strain alleles of submitted assays, and consensus values for this SNP

Legend

Assay ID Submitter
SNP ID
Submitter
Handle
Population Variation
Type
ss148162394 ENSMUSSNP1600656 ENSEMBL ENSEMBL_Sanger f SNP  AA                
ss320595302 CHEV_2_161595396 CHEVERUD SCREENING_POP f SNP             A  A   
ss37528949 NES08868440 PERLEGEN MM_PANEL2 f SNP A AAAA GAAGG AA AAA
ss45243110 mCV23725115 ABI CRAMUS_MOUSE f SNP AAA   G            
SNP Consensus Information
SNP Consensus
Type
rs27319024 SNP AAAAAAGGAAGGAAAAAAA
Gene/Marker
associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:161769660 (GRCm38) rs orient: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Ptprt protein tyrosine phosphatase, receptor type, T NM_021464
MGI Seq Detail
  Intron        

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
10/21/2014
MGI 5.20
The Jackson Laboratory