Genome Coordinate Discrepancy
The genome coordinates for mouse SNPs are derived from a
different NCBI build of the mouse genome than are the genome
coordinates for MGI genes (see details).
|
| ID/Version |
|
rs29706891
dbSNP (from dbSNP Build 128)
|
Created in dbSNP build: 125
Last updated in dbSNP build: 127
|
|
Additional
resources |
MPD |
Ensembl SNPView |
UCSC Browser |
NCBI MapViewer
|
| Variation |
Type: SNP
Alleles: C/G
|
Genome
location
and
flanking
sequence |
Location:
Chr3:10334574
(NCBI Build 37)
SNP orientation to the genome: forward
SNP reference flanking sequence:
TAGTGCATCT GCTGTACATT TTAAACTAGA GGAGTTTTTT CATATTCTGT GCTAAGGGAT
GGCCTTCTCT TAGCCTTGTA GACCAGAAGG AGCAGTAACA TTTCACAGCT GGAACACATG
GCTACTGTAA AGGGGGCTAC GGAGGCTTCG TGTGCCTTGG GCTGGGAAAA GGAAAGCTGA
ATGATGGCCA GAGCTAAGAA ACTATTCAAC ATCCCAGTTT CGAGAGCAAC CGTCTTGCAA
ACAGGAAGAG GCAGCAAGTA GACTTTAGCC AAGGAATAGC CAAACAAAAG GCCCAGTGCA
S
GAACCAGAAG CCCCAATAGA AACACCTCTA GGTTAGCCAT TCTCAGAAAC ACTAGTCCCA
TCCGGAAAGC CAAGTAGATG CCCACGAACA TTAAAGTCAA GCTCAGAGGC CGCACTACTC
TCTCTAAACA GATTGCTTTC GCAGGCATCT TGTGTTTAAT GATGACACCA GTCGACATTG
GCATAAGTAT GAAAAGAAGA GTAGACACAA TCTTTAACAC AGGGACGTGA AATGCACCTG
CTAAGCCCAG TAGCCGACTG TAAAAGTATG AGTTGACAGG CATCATGATG AGGGCCAGGG
S= C/G
Note: Sequence in lower case indicates low-complexity or
repetitive sequence
|
|
SNP assays
and
SNP consensus |
Strain alleles of submitted assays, and
consensus values for this SNP
Legend
|
Gene/Marker
associations
and
Function
Classes |
MGI genes/markers associated with the
SNP
|
Location:
Chr3:10334574
(NCBI Build 37)
rs orient: forward
|
| Symbol |
Name |
Transcript |
Protein |
Function
Class |
Allele |
Residue |
Codon
Position |
AA
Position |
| Slc10a5 |
solute carrier family 10 (sodium/bile acid cotransporter family), member 5 |
NM_001010834
MGI Seq Detail |
NP_001010834
MGI Seq Detail |
Coding-NonSynonymous |
G |
R |
2 |
342 |
NM_001010834
MGI Seq Detail |
NP_001010834
MGI Seq Detail |
Contig-Reference
|
C |
P |
2 |
342 |
|
Analysis Tools
