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Gli2 Gene Detail
 Symbol
Name
ID
Gli2
GLI-Kruppel family member GLI2
MGI:95728


Nomenclature History
Genetic Map
Chromosome 1
63.0 cM, cytoband E2-E4
Detailed Genetic Map ± 1 cM
 
Mapping data( 8)

Sequence Map
Chr1:120730709-120950196 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Gli2 ± 2 cM)
Protein SuperFamily: gli transforming protein
TreeFam: TF350216
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000034815 VEGA Gene Model | MGI Sequence Detail 219488 C57BL/6J ± Kb
transcript NM_001081125 RefSeq | MGI Sequence Detail 6708 -
polypeptide NP_001074594 RefSeq | MGI Sequence Detail 1544 -
For the selected sequences
All sequences(36)
Alleles
and
phenotypes
All alleles(135) : Targeted, knock-out(2) Targeted, other(10) Gene trapped(123)
Homozygotes for targeted null mutations exhibit skeletal malformations, absence of floorplate and foregut, lung and anorectal defects, and altered commissural neuron guidance. Most mutants die before embryonic day 18.5.
Polymorphisms PCR(1) SNPs within 2kb(944 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (82 annotations)
Process anatomical structure development, anatomical structure formation involved in morphogenesis...
Component cilium, cytoplasm...
Function chromatin binding, DNA binding...
This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase
Expression Literature Summary: (99 records)
Data Summary: Assays (24)    Results (138)    Tissues (102)    Images (44)
Theiler Stages: 12,13,15,16,17,19,20,21,22,23,25,28
  Assay Type Assays   Results
      RT-PCR 4   12
      RNA in situ 18   122
      Immunohistochemistry 1   2
      Northern blot 1   2
cDNA source data(46)
External Resources: Allen Brain Atlas  GENSAT  GEO  ArrayExpress 
Molecular
reagents
All nucleic(57) Genomic(3) cDNA(47) Primer pair(5) Other(2) Antibodies(1)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000048402
DoTS DT.483046
Consensus CDS Project CCDS35692.1
UniGene 273292
DFCI TC1605280
NIA Mouse Gene Index U021691
Entrez Gene 14633
VEGA Gene Model OTTMUSG00000034815
International Mouse Knockout Project Status Gli2
Protein
domains
InterPro ID Description
IPR007087 Zinc finger, C2H2-type
IPR013087 Zinc finger, C2H2-type/integrase, DNA-binding
IPR015880 Zinc finger, C2H2-like
References
(Earliest) J:4086 Hui CC et al., "A mouse model of greig cephalopolysyndactyly syndrome: the extra-toesJ mutation contains an intragenic deletion of the Gli3 gene." Nat Genet 1993 Mar;3(3):241-6
(Latest) J:155992 Ching S et al., "Targeted disruption of Sonic Hedgehog in the mouse adrenal leads to adrenocortical hypoplasia." Genesis 2009 Sep;47(9):628-37
All references(155)
Other
accession IDs
MGD-MRK-10106, MGI:2138602

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
02/06/2010
MGI_4.32
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The Jackson Laboratory