About   Help   FAQ
Ush1g Gene Detail
 Symbol
Name
ID
Ush1g
Usher syndrome 1G homolog (human)
MGI:2450757


Nomenclature History
Synonyms js, Sans
Genetic Map
Chromosome 11
77.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 1)

Sequence Map
Chr11:115176506-115183355 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Ush1g ± 2 cM)
TreeFam: TF324946
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000003746 VEGA Gene Model | MGI Sequence Detail 6850 C57BL/6J ± Kb
transcript NM_176847 RefSeq | MGI Sequence Detail 3183 C57BL/6
polypeptide Q80T11 UniProt | EBI | MGI Sequence Detail 461 Not Applicable
For the selected sequences
All sequences(16)
Alleles
and
phenotypes
All alleles(4) : Targeted, knock-out(1) Spontaneous(3)
Mutant homozygotes exhibit hyperactivity, head-tossing, circling behavior and profound deafness. Structurally, mutants display disorganized stereocilia of outer ear hair cells and degeneration of inner ear neuroepithelia.
Polymorphisms SNPs within 2kb(25 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(11)
Process inner ear morphogenesis, inner ear receptor cell differentiation...
Component actin cytoskeleton, cytoplasm...
Function protein binding, protein homodimerization activity...
This is a GO Consortium Reference Genome Project gene.
External Resources: MouseFunc
Expression Literature Summary: (3 records)
Data Summary: Assays (2)    Results (20)    Tissues (19)
Theiler Stages: 15,20,23,25,28
  Assay Type Assays   Results
      RT-PCR 1   17
      RNA in situ 1   3
cDNA source data(2)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(4) Genomic(1) cDNA(2) Primer pair(1)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000045288
DoTS DT.101347890
UniGene 451539
DFCI TC1595524
NIA Mouse Gene Index U149435
Entrez Gene 16470
VEGA Gene Model OTTMUSG00000003746
International Mouse Knockout Project Status Ush1g
Protein
domains
InterPro ID Description
IPR001660 Sterile alpha motif SAM
IPR002110 Ankyrin repeat
IPR010993 Sterile alpha motif homology
IPR019157 High-temperature-induced dauer-formation protein-like
IPR020683 Ankyrin repeat-containing domain
Graphical View of Protein Domain Structure
References
(Earliest) J:13462 Dickie MM et al., "Jackson shaker, js" Mouse News Lett 1967;36():39
(Latest) J:135991 Lefevre G et al., "A core cochlear phenotype in USH1 mouse mutants implicates fibrous links of the hair bundle in its cohesion, orientation and differential growth." Development 2008 Apr;135(8):1427-37
All references(18)
Other
accession IDs
MGD-MRK-11532, MGI:96641

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
11/20/2009
MGI_4.31
Web browser compatibility
The Jackson Laboratory