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Hps6 Gene Detail
 Symbol
Name
ID
Hps6
Hermansky-Pudlak syndrome 6
MGI:2181763


Nomenclature History
Synonyms 5330434M19Rik, BLOC-2, ru, ruby eye
Genetic Map
Chromosome 19
44.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 38)

Sequence Map
Chr19:46077998-46080643 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Hps6 ± 2 cM)
Protein SuperFamily: BLOC-2 complex, Hps6 subunit
TreeFam: TF331635
Sequences
Representative Sequences Length Strain/Species Flank
genomic 20170 NCBI Gene Model | MGI Sequence Detail 2646 C57BL/6J ± Kb
transcript NM_176785 RefSeq | MGI Sequence Detail 2696 C57BL/6
polypeptide Q8BLY7 UniProt | EBI | MGI Sequence Detail 805 Not Applicable
For the selected sequences
All sequences(23)
Alleles
and
phenotypes
All alleles(9) : Spontaneous(8) Chemically induced(1)
Mutations in this gene result in hypopigmented hair and eyes, and increased clotting time due to a platelet dense granule defect.
Associated Human Diseases (2)   Alleles Annotated to Human Diseases (2)   Phenotype Images (2)  
Polymorphisms SNPs within 2kb(21 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(6)
Process blood coagulation, melanocyte differentiation...
Function protein binding
External Resources: MouseFunc
Expression cDNA source data(20)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(20) cDNA(20)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000074811
DoTS DT.91436725, DT.99847281
UniGene 101110
DFCI TC1580503
NIA Mouse Gene Index U019515
Entrez Gene 20170
International Mouse Knockout Project Status Hps6
Protein
domains
InterPro ID Description
IPR017218 BLOC-2 complex, Hps6 subunit
Graphical View of Protein Domain Structure
References
(Earliest) J:14915 So M et al., "On the inheritance of ruby eye in mice" Jpn J Genet 1926;4():1-9
(Latest) J:151204 Graham GJ et al., "Endobrevin/VAMP-8-dependent dense granule release mediates thrombus formation in vivo." Blood 2009 Jul 30;114(5):1083-90
All references(65)
Other
accession IDs
MGD-MRK-14249, MGI:2442441, MGI:98204

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory