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Chd7 Gene Detail
 Symbol
Name
ID
Chd7
chromodomain helicase DNA binding protein 7
MGI:2444748


Nomenclature History
Synonyms A730019I05Rik, Cycn, Cyn, Dz, Edy, Flo, GENA 47, Gena 52, GENA 60, Lda, Mt, Obt, Todo, WBE1, Whi
Genetic Map
Chromosome 4
1.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 10)

Sequence Map
Chr4:8617617-8794806 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Chd7 ± 2 cM)
TreeFam: TF313572
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000004417 VEGA Gene Model | MGI Sequence Detail 177190 C57BL/6J ± Kb
transcript NM_001081417 RefSeq | MGI Sequence Detail 9444 -
polypeptide A2AJK6 UniProt | EBI | MGI Sequence Detail 2986 Not Applicable
For the selected sequences
All sequences(31)
Alleles
and
phenotypes
All alleles(27) : Gene trapped(18) Chemically induced(9)
Heterozygotes for mutations of this gene exhibit a variety of combinations of hyperactivity, circling, head-bobbing, semicircular canal defects, hearing loss, reduced size, and tail-kink.
Associated Human Diseases (1)   Alleles Annotated to Human Diseases (2)   Phenotype Images (2)  
Polymorphisms SNPs within 2kb(947 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(34)
Process adult heart development, adult walking behavior...
Component chromatin, nucleus...
Function ATP binding, ATP-dependent helicase activity...
External Resources: MouseFunc
Expression Literature Summary: (6 records)
Data Summary: Assays (3)    Results (5)    Tissues (5)    Images (1)
Theiler Stages: 11,13,17,22
  Assay Type Assays   Results
      RT-PCR 1   2
      RNA in situ 2   3
cDNA source data(64)
External Resources: GENSAT  GEO 
Molecular
reagents
All nucleic(67) Genomic(2) cDNA(64) Primer pair(1)
Microarray probesets(30)
Other database
links
Ensembl Gene Model ENSMUSG00000041235
DoTS DT.101137757, DT.103571585, DT.110790224, DT.527479, DT.60102312, DT.91403896, DT.99850267
UniGene 138792
DFCI TC1585262, TC1601139, TC1631410, TC1711005
NIA Mouse Gene Index U004053
Entrez Gene 320790
VEGA Gene Model OTTMUSG00000004417
International Mouse Knockout Project Status Chd7
Protein
domains
InterPro ID Description
IPR000330 SNF2-related
IPR000953 Chromo domain
IPR001005 SANT, DNA-binding
IPR001650 DNA/RNA helicase, C-terminal
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
IPR006576 BRK domain
IPR014001 DEAD-like helicase, N-terminal
IPR014021 Helicase, superfamily 1/2, ATP-binding domain
Graphical View of Protein Domain Structure
References
(Earliest) J:63816 Nolan PM et al., "A systematic, genome-wide, phenotype-driven mutagenesis programme for gene function studies in the mouse." Nat Genet 2000 Aug;25(4):440-3
(Latest) J:148116 Layman WS et al., "Defects in neural stem cell proliferation and olfaction in Chd7 deficient mice indicate a mechanism for hyposmia in human CHARGE syndrome." Hum Mol Genet 2009 Jun 1;18(11):1909-23
All references(15)
Other
accession IDs
MGI:1861982, MGI:1861985, MGI:1861987, MGI:1861988, MGI:1862038, MGI:1890591, MGI:1890592, MGI:2662565, MGI:2662566

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory