About   Help   FAQ
Hhat Gene Detail
 Symbol
Name
ID
Hhat
hedgehog acyltransferase
MGI:2444681


Nomenclature History
Synonyms 2810432O22Rik, Skn
Genetic Map
Chromosome 1
Syntenic
 
Mapping data( 2)
Sequence Map
Chr1:194336710-194597407 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic    (Mammalian Orthology)
Protein SuperFamily: hhat
TreeFam: TF315826
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000027097 VEGA Gene Model | MGI Sequence Detail 260698 C57BL/6J ± Kb
transcript NM_144881 RefSeq | MGI Sequence Detail 2835 C57BL/6
polypeptide Q8BMT9 UniProt | EBI | MGI Sequence Detail 499 Not Applicable
For the selected sequences
All sequences(28)
Alleles
and
phenotypes
All alleles(4) : Targeted, knock-out(2) Gene trapped(2)
Homozygous null mice display neonatal lethality, holoprosencephaly, short-limb dwarfism, and oligodactyly.
Polymorphisms SNPs within 2kb(1572 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process multicellular organismal development, protein palmitoylation...
Component endoplasmic reticulum, integral to membrane...
Function acyltransferase activity, GTP binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (2)    Results (7)    Tissues (7)
Theiler Stages: 10,13,15,17
  Assay Type Assays   Results
      RNA in situ 1   6
      Northern blot 1   1
cDNA source data(16)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents
All nucleic(18) Genomic(1) cDNA(16) Other(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000037375
DoTS DT.40144108, DT.55228763, DT.55282967, DT.91337323, DT.94273623, DT.99852184
Consensus CDS Project CCDS15628.1
UniGene 145857
DFCI TC1584674, TC1617465, TC1637865
NIA Mouse Gene Index U022213, U127908
Entrez Gene 226861
VEGA Gene Model OTTMUSG00000027097
International Mouse Knockout Project Status Hhat
Protein
domains
InterPro ID Description
IPR004299 Membrane bound O-acyl transferase, MBOAT
Graphical View of Protein Domain Structure
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" Nature 2002;420():563-573
(Latest) J:132152 Chamberlain CE et al., "Notochord-derived Shh concentrates in close association with the apically positioned basal body in neural target cells and forms a dynamic gradient during neural patterning." Development 2008 Mar;135(6):1097-106
All references(7)
Other
accession IDs
MGI:3034628

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
Warranty Disclaimer & Copyright Notice
Send questions and comments to User Support.
last database update
02/06/2010
MGI_4.32
Web browser compatibility
The Jackson Laboratory