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Clec9a Gene Detail
 Symbol
Name
ID
Clec9a
C-type lectin domain family 9, member a
MGI:2444608

Nomenclature History
Synonyms 9830005G06Rik, DNGR-1
Genetic Map
Chromosome 6
Syntenic
 
Mapping data( 2)
Sequence Map
Chr6:129358880-129374780 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF336674
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000027008 VEGA Gene Model | MGI Sequence Detail 15901 C57BL/6J ± Kb
transcript NM_172732 RefSeq | MGI Sequence Detail 1156 C57BL/6
polypeptide Q8BRU4 UniProt | EBI | MGI Sequence Detail 238 Not Applicable
For the selected sequences
All sequences(25)
Alleles
and
phenotypes 		All alleles(1) : Targeted, other(1)
Homozygous null mice have CD8alpha+ dendritic cells that are defective in cross-presentation of dead-cell associated antigens.
Polymorphisms SNPs within 2kb(175 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (6 annotations)
Component integral to membrane, membrane...
Function binding, receptor activity...
External Resources: FuncBase
Expression cDNA source data(5)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(5) cDNA(5)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000046080
DoTS DT.87041846, DT.94185742
Consensus CDS Project CCDS39658.1
UniGene 391518
DFCI TC1586095, TC1596408
Entrez Gene 232414
VEGA Gene Model OTTMUSG00000027008
International Mouse Knockout Project Status Clec9a
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR002353 Type II antifreeze protein
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
IPR018378 C-type lectin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs" Nature 2002;420():563-573
(Latest) J:147472 Sancho D et al., "Identification of a dendritic cell receptor that couples sensing of necrosis to immunity." Nature 2009 Apr 16;458(7240):899-903
All references(4)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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