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Hps5 Gene Detail
 Symbol
Name
ID
Hps5
Hermansky-Pudlak syndrome 5 homolog (human)
MGI:2180307


Nomenclature History
Synonyms ru-2, ru2, ruby eye 2
Genetic Map
Chromosome 7
25.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 11)

Sequence Map
Chr7:54015836-54051434 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic    (Mammalian Orthology)
Comparative Map (Mouse/Human Hps5 ± 2 cM)
Protein SuperFamily: BLOC-2 complex, Hps5 subunit
TreeFam: TF323607
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000024390 VEGA Gene Model | MGI Sequence Detail 35599 C57BL/6J ± Kb
transcript NM_001005247 RefSeq | MGI Sequence Detail 4625 C57BL/6
polypeptide P59438 UniProt | EBI | MGI Sequence Detail 1126 Not Applicable
For the selected sequences
All sequences(41)
Alleles
and
phenotypes
All alleles(62) : Gene trapped(53) Spontaneous(6) Chemically induced(3)
Homozygotes have hypopigmented eyes and hair, impaired secretion of lysosomal enzymes by renal proximal tubules and reduced clotting due to a platelet dense granule defect. Homozygotes for one allele are less susceptible to diet-induced atherosclerosis.
Associated Human Diseases (2)   Alleles Annotated to Human Diseases (4)  
Polymorphisms SNPs within 2kb(314 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(4)
Process blood coagulation, organelle organization...
Function protein binding
External Resources: MouseFunc
Expression cDNA source data(11)
External Resources: GEO 
Molecular
reagents
All nucleic(11) cDNA(11)
Microarray probesets(1)
Other database
links
Ensembl Gene Model ENSMUSG00000014418
DoTS DT.101383574, DT.101383577, DT.101734778, DT.103559851, DT.110994833, DT.529385, DT.94128535, DT.99845191
DFCI TC1577759, TC1593203, TC1654562
NIA Mouse Gene Index U028563
Entrez Gene 246694
VEGA Gene Model OTTMUSG00000024390
International Mouse Knockout Project Status Hps5
Protein
domains
InterPro ID Description
IPR011046 WD40 repeat-like-containing domain
IPR015943 WD40/YVTN repeat-like-containing domain
IPR017217 BLOC-2 complex, Hps5 subunit
Graphical View of Protein Domain Structure
References
(Earliest) J:15003 Bateman N, "Maroon - allele of silver?" Mouse News Lett 1957;16():7
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(31)
Other
accession IDs
MGD-MRK-11042, MGD-MRK-12533, MGD-MRK-14250, MGD-MRK-14251, MGI:2142017, MGI:2142086, MGI:2142352, MGI:98205

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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