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Galnt10 Gene Detail
 Symbol
Name
ID
Galnt10
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10
MGI:1890480

Nomenclature History
Synonyms C330012K04Rik, GalNAc-T10, Galnt9
Genetic Map
Chromosome 11
Syntenic
 
Mapping data( 2)
Sequence Map
Chr11:57458944-57601016 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: polypeptide N-acetylgalactosaminyltransferase
TreeFam: TF313267
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000005711 VEGA Gene Model | MGI Sequence Detail 142073 C57BL/6J ± Kb
transcript NM_134189 RefSeq | MGI Sequence Detail 4725 -
polypeptide Q6P9S7 UniProt | EBI | MGI Sequence Detail 603 Not Applicable
For the selected sequences
All sequences(42)
Alleles
and
phenotypes 		All alleles(14) : Gene trapped(14)
Mice homozygous for a disruption in this gene display a normal phenotype.
Polymorphisms SNPs within 2kb(651 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process protein amino acid O-linked glycosylation
Component Golgi apparatus, integral to membrane...
Function calcium ion binding, manganese ion binding...
External Resources: FuncBase
Expression Literature Summary: (2 records)
Data Summary: Assays (1)    Results (17)    Tissues (17)
Theiler Stages: 11,20,22,24
  Assay Type Assays   Results
      RNA in situ 1   17
cDNA source data(95)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(99) Genomic(2) cDNA(96) Primer pair(1)
Microarray probesets(3)
Other database
links
EC 2.4.1.41
Ensembl Gene Model ENSMUSG00000020520
DoTS DT.101303352, DT.110536325, DT.490258, DT.55230444, DT.94270751, DT.99841167
Consensus CDS Project CCDS24719.1
UniGene 271670
DFCI TC1580049, TC1598197, TC1629110, TC1631059, TC1647000
NIA Mouse Gene Index U012641
Entrez Gene 171212
VEGA Gene Model OTTMUSG00000005711
International Mouse Knockout Project Status Galnt10
Protein
domains
InterPro ID Description
IPR000772 Ricin B lectin
IPR001173 Glycosyl transferase, family 2
IPR008997 Ricin B-related lectin
Graphical View of Protein Domain Structure
References
(Earliest) J:60984 Ko MS et al., "Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development." Development 2000 Apr;127(8):1737-49
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(10)
Other
accession IDs 		MGI:1924599, MGI:2144381
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory