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Colec12 Gene Detail
 Symbol
Name
ID
Colec12
collectin sub-family member 12
MGI:2152907

Nomenclature History
Synonyms CL-P1, Scara4, SRCL
Genetic Map
Chromosome 18
Syntenic
 
Mapping data( 1)
Sequence Map
Chr18:9707675-9877990 bp, + strand
(From NCBI annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF332426
Sequences
Representative Sequences Length Strain/Species Flank
genomic 140792 NCBI Gene Model | MGI Sequence Detail 170316 C57BL/6J ± Kb
transcript NM_130449 RefSeq | MGI Sequence Detail 3322 C57BL/6
polypeptide Q8K4Q8 UniProt | EBI | MGI Sequence Detail 742 Not Applicable
For the selected sequences
All sequences(18)
Alleles
and
phenotypes 		All alleles(2) : Gene trapped(2)
Polymorphisms SNPs within 2kb(282 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (11 annotations)
Process immune response, phagocytosis, recognition...
Component integral to membrane, membrane...
Function binding, calcium ion binding...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (1)    Results (2)    Tissues (2)
Theiler Stages: 11,13
  Assay Type Assays   Results
      RNA in situ 1   2
cDNA source data(47)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(48) cDNA(48)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000036103
DoTS DT.55232919, DT.97369103
Consensus CDS Project CCDS37732.1
UniGene 218571
PDB 2OX9
DFCI TC1579616
NIA Mouse Gene Index U018393
Entrez Gene 140792
International Mouse Knockout Project Status Colec12
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR002353 Type II antifreeze protein
IPR008160 Collagen triple helix repeat
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
IPR018378 C-type lectin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:72785 Ohtani K et al., "The membrane-type collectin CL-P1 is a scavenger receptor on vascular endothelial cells." J Biol Chem 2001 Nov 23;276(47):44222-8
(Latest) J:141291 Tamplin OJ et al., "Microarray analysis of Foxa2 mutant mouse embryoa reveals novel gene expression and inductive roles for the gastrula organizer and its derivatives" BMC Genomics 2008;9(1):511
All references(9)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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