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Spnb4 Gene Detail
 Symbol
Name
ID
Spnb4
spectrin beta 4
MGI:1890574


Nomenclature History
Synonyms 1700022P15Rik, 5830426A08Rik, dyn, neuroaxonal dystrophy, nmf261, ROSA62, SpbIV
Genetic Map
Chromosome 7
7.5 cM, cytoband A3
Detailed Genetic Map ± 1 cM
 
Mapping data( 10)

Sequence Map
Chr7:28141402-28232705 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Spnb4 ± 2 cM)
Protein SuperFamily: spectrin, beta subunit
TreeFam: TF313446
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000023763 VEGA Gene Model | MGI Sequence Detail 91304 C57BL/6J ± Kb
transcript NM_032610 RefSeq | MGI Sequence Detail 8737 C57BL/6
polypeptide NP_115999 RefSeq | MGI Sequence Detail 2561 C57BL/6
For the selected sequences
All sequences(60)
Alleles
and
phenotypes
All alleles(45) : Targeted, knock-out(2) Gene trapped(31) Spontaneous(9) Chemically induced(3)
Homozygotes for spontaneous mutations exhibit tremors, progressive ataxia with hind limb paralysis, central deafness, reduced body weight, and shortened lifespan. Males are sterile, but females may breed.
Phenotype Images (1)  
Polymorphisms RFLP(1) SNPs within 2kb(315 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(16)
Process adult behavior, adult walking behavior...
Component axon, axon hillock...
Function actin binding, ankyrin binding...
External Resources: MouseFunc
Expression Literature Summary: (3 records)
Data Summary: Assays (5)    Results (23)    Tissues (17)    Images (4)
Theiler Stages: 10,15,28
  Assay Type Assays   Results
      Western blot 2   6
      RT-PCR 1   1
      RNA in situ 1   4
      Northern blot 1   12
cDNA source data(15)
External Resources: GEO 
Molecular
reagents
All nucleic(18) cDNA(17) Primer pair(1) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000011751, ENSMUSG00000078782
DoTS DT.40143223, DT.55139764, DT.55198566, DT.97397582, DT.97397584, DT.97397586
UniGene 459123
DFCI TC1584623, TC1591809, TC1686518
NIA Mouse Gene Index U079737
Entrez Gene 80297
VEGA Gene Model OTTMUSG00000023763
International Mouse Knockout Project Status Spnb4
Protein
domains
InterPro ID Description
IPR001589 Actinin-type, actin-binding, conserved site
IPR001605 Spectrin/pleckstrin-like
IPR001715 Calponin-like actin-binding
IPR001849 Pleckstrin homology
IPR002017 Spectrin repeat
IPR011993 Pleckstrin homology-type
IPR016146 Calponin-homology
IPR016343 Spectrin, beta subunit
IPR018159 Spectrin/alpha-actinin
References
(Earliest) J:167 Yoon CH et al., "Quivering, a new first Chromosome mutation in mice" J Hered 1957;48():176-80
(Latest) J:142574 Legendre K et al., "alphaII-betaV spectrin bridges the plasma membrane and cortical lattice in the lateral wall of the auditory outer hair cells." J Cell Sci 2008 Oct 15;121(Pt 20):3347-56
All references(40)
Other
accession IDs
MGD-MRK-11840, MGD-MRK-13741, MGD-MRK-9265, MGI:1922798, MGI:1923290, MGI:3514294, MGI:3589010, MGI:97840

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory