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Chst1 Gene Detail
 Symbol
Name
ID
Chst1
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1
MGI:1924219

Nomenclature History
Synonyms 2610008E20Rik, C6ST, GST-1, KSGAL6ST
Genetic Map
Chromosome 2
cytoband D-E1
 
Mapping data( 3)
Sequence Map
Chr2:92439864-92455407 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Protein SuperFamily: carbohydrate sulfotransferase
TreeFam: TF342871
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000014572 VEGA Gene Model | MGI Sequence Detail 15544 C57BL/6J ± Kb
transcript NM_023850 RefSeq | MGI Sequence Detail 2682 C57BL/6
polypeptide Q9EQC0 UniProt | EBI | MGI Sequence Detail 411 Not Applicable
For the selected sequences
All sequences(19)
Alleles
and
phenotypes 		All alleles(1) : Targeted, knock-out(1)
Polymorphisms SNPs within 2kb(75 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (10 annotations)
Process carbohydrate metabolic process, inflammatory response...
Component Golgi apparatus, Golgi membrane...
Function keratan sulfotransferase activity, sulfotransferase activity...
External Resources: FuncBase
Expression Literature Summary: (1 records)
Data Summary: Assays (2)    Results (3)    Tissues (2)
Theiler Stages: 22,23
  Assay Type Assays   Results
      RT-PCR 1   2
      RNA in situ 1   1
cDNA source data(22)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(25) Genomic(1) cDNA(22) Primer pair(2)
Microarray probesets(2)
Other database
links
EC 2.8.2.21
Ensembl Gene Model ENSMUSG00000027221
DoTS DT.101378029, DT.481588
Consensus CDS Project CCDS16450.1
UniGene 38021
DFCI TC1580563, TC1606373
NIA Mouse Gene Index U002142
Entrez Gene 76969
VEGA Gene Model OTTMUSG00000014572
International Mouse Knockout Project Status Chst1
Protein
domains
InterPro ID Description
IPR000863 Sulfotransferase domain
IPR016469 Carbohydrate sulfotransferase
Graphical View of Protein Domain Structure
References
(Earliest) J:65060 Kawai J et al., "Functional annotation of a full-length mouse cDNA collection." Nature 2001 Feb 8;409(6821):685-90
(Latest) J:115165 Hecht J et al., "Detection of novel skeletogenesis target genes by comprehensive analysis of a Runx2(-/-) mouse model." Gene Expr Patterns 2007 Jan;7(1-2):102-12
All references(7)
Other
accession IDs 		MGI:2139320
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory