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Gpc6 Gene Detail
 Symbol
Name
ID
Gpc6
glypican 6
MGI:1346322

Nomenclature History
Synonyms 6720429C22Rik
Genetic Map
Chromosome 14
cytoband E4
 
Mapping data( 3)
Sequence Map
Chr14:117324519-118378751 bp, + strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic    (Mammalian Orthology)
Protein SuperFamily: glypican
TreeFam: TF105317
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000018004 VEGA Gene Model | MGI Sequence Detail 1054233 C57BL/6J ± Kb
transcript NM_001079844 RefSeq | MGI Sequence Detail 6762 C57BL/6
polypeptide Q9R087 UniProt | EBI | MGI Sequence Detail 555 Not Applicable
For the selected sequences
All sequences(36)
Alleles
and
phenotypes 		All alleles(2) : Gene trapped(2)
Polymorphisms SNPs within 2kb(6533 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (8 annotations)
Component anchored to membrane, extracellular region...
Function heparan sulfate proteoglycan binding
External Resources: FuncBase
Expression Literature Summary: (7 records)
Data Summary: Assays (2)    Results (3)    Tissues (3)    Images (2)
Theiler Stages: 16,17
  Assay Type Assays   Results
      RT-PCR 1   1
      RNA in situ 1   2
cDNA source data(49)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(52) Genomic(2) cDNA(49) Primer pair(1)
Microarray probesets(3)
Other database
links
VEGA Gene Model OTTMUSG00000018004
Entrez Gene 23888
DoTS DT.101269128, DT.101712151, DT.40153178, DT.97409368
DFCI TC1584382, TC1587681, TC1624200, TC1636954, TC1647488
Ensembl Gene Model ENSMUSG00000058571
Consensus CDS Project CCDS27330.1, CCDS37008.1
UniGene 440025
International Mouse Knockout Project Status Gpc6
Protein
domains
InterPro ID Description
IPR001863 Glypican
IPR019803 Glypican, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:57579 Veugelers M et al., "Glypican-6, a new member of the glypican family of cell surface heparan sulfate proteoglycans." J Biol Chem 1999 Sep 17;274(38):26968-77
(Latest) J:153618 Ahrens MJ et al., "Convergent extension movements in growth plate chondrocytes require gpi-anchored cell surface proteins." Development 2009 Oct;136(20):3463-74
All references(10)
Other
accession IDs 		MGI:1924985, MGI:2145665
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
Web browser compatibility 		The Jackson Laboratory