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Adamts5 Gene Detail
 Symbol
Name
ID
Adamts5
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2)
MGI:1346321


Nomenclature History
Synonyms 9530092O11Rik, ADAM-TS5
Genetic Map
Chromosome 16
62.0 cM
Detailed Genetic Map ± 1 cM
 
Mapping data( 3)

Sequence Map
Chr16:85858415-85901370 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Adamts5 ± 2 cM)
TreeFam: TF331949
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000022894 Ensembl Gene Model | MGI Sequence Detail 42956 C57BL/6J ± Kb
transcript NM_011782 RefSeq | MGI Sequence Detail 8104 C57BL/6
polypeptide Q9R001 UniProt | EBI | MGI Sequence Detail 930 Not Applicable
For the selected sequences
All sequences(33)
Alleles
and
phenotypes
All alleles(6) : Targeted, knock-out(2) Targeted, other(3) Gene trapped(1)
Mice homozygous for one null allele exhibit a significant reduction in cartilage degradation after induction of osteoarthritis whereas those homozygous for another show no affect.
Polymorphisms RFLP(1) SNPs within 2kb(210 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(13)
Process integrin-mediated signaling pathway, proteolysis...
Component extracellular matrix, extracellular region...
Function hydrolase activity, metal ion binding...
External Resources: MouseFunc
Expression Literature Summary: (10 records)
Data Summary: Assays (7)    Results (244)    Tissues (179)    Images (94)
Theiler Stages: 10,13,15,17,18,20,22,23,25,26,28
  Assay Type Assays   Results
      RT-PCR 2   54
      In situ reporter (knock in) 1   111
      RNA in situ 3   75
      Northern blot 1   4
cDNA source data(16)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(18) cDNA(16) Primer pair(2)
Microarray probesets(3)
Other database
links
Ensembl Gene Model ENSMUSG00000022894
DoTS DT.91284377
DFCI TC1584498, TC1598269, TC1618555
NIA Mouse Gene Index U017330, U037244
Entrez Gene 23794
International Mouse Knockout Project Status Adamts5
Protein
domains
InterPro ID Description
IPR000884 Thrombospondin, type 1 repeat
IPR001590 Peptidase M12B, ADAM/reprolysin
IPR002870 Peptidase M12B, propeptide
IPR006025 Peptidase M, neutral zinc metallopeptidases, zinc-binding site
IPR010294 ADAM-TS Spacer 1
IPR013273 Peptidase M12B, ADAM-TS
IPR013276 Peptidase M12B, ADAM-TS5
IPR018358 Disintegrin, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:56831 Abbaszade I et al., "Cloning and characterization of ADAMTS11, an aggrecanase from the ADAMTS family." J Biol Chem 1999 Aug 13;274(33):23443-50
(Latest) J:148803 McCulloch DR et al., "Adamts5, the gene encoding a proteoglycan-degrading metalloprotease, is expressed by specific cell lineages during mouse embryonic development and in adult tissues." Gene Expr Patterns 2009 Feb 27;():
All references(19)
Other
accession IDs
MGI:1925767, MGI:2146445

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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Funding Information
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last database update
11/20/2009
MGI_4.31
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The Jackson Laboratory