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Slc26a4 Gene Detail
 Symbol
Name
ID
Slc26a4
solute carrier family 26, member 4
MGI:1346029


Nomenclature History
Synonyms Pds, pendrin
Genetic Map
Chromosome 12
15.0 cM, cytoband B1
Detailed Genetic Map ± 1 cM
 
Mapping data( 2)

Sequence Map
Chr12:32204692-32244834 bp, - strand
(From Ensembl annotation of NCBI Build 37)
Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
Comparative Map (Mouse/Human Slc26a4 ± 2 cM)
Protein SuperFamily: sulfate transport protein
TreeFam: TF313784
Sequences
Representative Sequences Length Strain/Species Flank
genomic ENSMUSG00000020651 Ensembl Gene Model | MGI Sequence Detail 40143 C57BL/6J ± Kb
transcript NM_011867 RefSeq | MGI Sequence Detail 3083 C57BL/6
polypeptide Q9R155 UniProt | EBI | MGI Sequence Detail 780 Not Applicable
For the selected sequences
All sequences(11)
Alleles
and
phenotypes
All alleles(3) : Targeted, knock-out(1) Gene trapped(1) Spontaneous(1)
Homozygous null mutants are completely deaf with vestibular dysfunction. Mutants show endolymphatic dilatation, degeneration of sensory cells and malformations of otoconia and otoconial membranes. They display unsteady gait and circling and head bobbing.
Associated Human Diseases (2)   Alleles Annotated to Human Diseases (2)   Phenotype Images (3)  
Polymorphisms SNPs within 2kb(111 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications(16)
Process organ morphogenesis, regulation of pH...
Component apical plasma membrane, integral to membrane...
Function anion transmembrane transporter activity, chloride ion binding...
External Resources: MouseFunc
Expression Literature Summary: (8 records)
Data Summary: Assays (3)    Results (15)    Tissues (9)
Theiler Stages: 21,22,23,24,25,26,28
  Assay Type Assays   Results
      Western blot 2   10
      RT-PCR 1   5
cDNA source data(4)
External Resources: Allen Brain Atlas  GEO 
Molecular
reagents
All nucleic(5) cDNA(4) Primer pair(1) Antibodies(1)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000020651
DoTS DT.40172738
UniGene 100187
DFCI TC1585767
NIA Mouse Gene Index U033879
Entrez Gene 23985
International Mouse Knockout Project Status Slc26a4
Protein
domains
InterPro ID Description
IPR001902 Sulphate anion transporter
IPR002645 Sulphate transporter/antisigma-factor antagonist STAS
IPR011547 Sulphate transporter
IPR018045 Sulphate anion transporter, conserved site
Graphical View of Protein Domain Structure
References
(Earliest) J:57104 Everett LA et al., "Expression pattern of the mouse ortholog of the Pendred's syndrome gene (Pds) suggests a key role for pendrin in the inner ear." Proc Natl Acad Sci U S A 1999 Aug 17;96(17):9727-32
(Latest) J:154001 Wangemann P et al., "Developmental delays consistent with cochlear hypothyroidism contribute to failure to develop hearing in mice lacking Slc26a4/pendrin expression." Am J Physiol Renal Physiol 2009 Nov;297(5):F1435-47
All references(28)

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/20/2009
MGI_4.31
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