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Clec5a Gene Detail
 Symbol
Name
ID
Clec5a
C-type lectin domain family 5, member a
MGI:1345151

Nomenclature History
Synonyms Clecsf5, Ly100, MDL-1, myeloid DAP12-associating lectin-1
Genetic Map
Chromosome 6
cytoband B2
 
Mapping data( 2)
Sequence Map
Chr6:40524897-40535802 bp, - strand
(From VEGA annotation of NCBI Build 37)
VEGA ContigView | Ensembl ContigView | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser
Mammalian
homology
human; chimpanzee; cattle; dog, domestic; rat    (Mammalian Orthology)
TreeFam: TF337735
Sequences
Representative Sequences Length Strain/Species Flank
genomic OTTMUSG00000026898 VEGA Gene Model | MGI Sequence Detail 10906 C57BL/6J ± Kb
transcript NM_001038604 RefSeq | MGI Sequence Detail 3820 C57BL/6
polypeptide Q9R007 UniProt | EBI | MGI Sequence Detail 165 Not Applicable
For the selected sequences
All sequences(21)
Polymorphisms SNPs within 2kb(58 from dbSNP Build 128)  
Gene Ontology
(GO)
classifications
All GO classifications: (5 annotations)
Process immune response
Component integral to membrane, membrane...
Function binding, sugar binding...
External Resources: FuncBase
Expression cDNA source data(9)
External Resources: Allen Brain Atlas  GEO  ArrayExpress 
Molecular
reagents 		All nucleic(11) cDNA(11)
Microarray probesets(2)
Other database
links
Ensembl Gene Model ENSMUSG00000029915
DoTS DT.484247, DT.91310859, DT.94215443
Consensus CDS Project CCDS20036.1, CCDS20037.1
UniGene 103765
DFCI TC1585445, TC1590704
Entrez Gene 23845
VEGA Gene Model OTTMUSG00000026898
International Mouse Knockout Project Status Clec5a
Protein
domains
InterPro ID Description
IPR001304 C-type lectin
IPR016186 C-type lectin-like
IPR016187 C-type lectin fold
Graphical View of Protein Domain Structure
References
(Earliest) J:57105 Bakker AB et al., "Myeloid DAP12-associating lectin (MDL)-1 is a cell surface receptor involved in the activation of myeloid cells." Proc Natl Acad Sci U S A 1999 Aug 17;96(17):9792-6
(Latest) J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), "The Transcriptional Landscape of the Mammalian Genome" Science 2005;309(5740):1559-1563
All references(4)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
02/06/2010
MGI_4.32
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